SMTL ID : 8u3y.1

SpG Cas9 with NGG PAM DNA target

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

monomer

Ligands

5 x MG: MAGNESIUM ION(Non-covalent)(Non-functional Binders)

MG.1: 2 residues within 4Å: Chain A: D.8, E.760 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.8, A:E.760, A:E.760 MG.2: 2 residues within 4Å: Chain A: D.8, H.981 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.8, A:H.981 MG.3: 6 residues within 4Å: Chain A: D.837, H.838, N.861, K.864 Chain C: G.16 Chain D: T.1 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:D.837 MG.4: 3 residues within 4Å: Chain A: T.1100 Chain B: U.64, A.65 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:T.1100 MG.5: 1 residues within 4Å: Chain D: A.11 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hibshman, G.N. et al., Unraveling the mechanisms of PAMless DNA interrogation by SpRY-Cas9. Nat Commun (2024)

Release Date

2024-05-01

Peptides

CRISPR-associated endonuclease Cas9/Csn1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

CRISPR-associated endonuclease Cas9/Csn1