SMTL ID : 8u44.1

CryoEM structure of A/Solomon Islands/3/2006 H1 HA in complex with 05.GC.w2.3C10-H1_SI06

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-3-3-3-3-mer

Ligands

9 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 1 residues within 4Å: Chain C: N.53 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:N.53 NAG.2: 1 residues within 4Å: Chain C: N.167 No protein-ligand interaction detected (PLIP) NAG.3: 6 residues within 4Å: Chain A: K.44, T.95, T.97, Y.99 Chain C: D.317, N.328 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain C Hydrophobic interactions: A:T.97 Hydrogen bonds: A:Y.99, A:Y.99, C:N.328 NAG.4: 1 residues within 4Å: Chain G: N.53 1 PLIP interactions: 1 interactions with chain G Hydrogen bonds: G:N.53 NAG.5: 1 residues within 4Å: Chain G: N.167 No protein-ligand interaction detected (PLIP) NAG.6: 6 residues within 4Å: Chain E: K.44, T.95, T.97, Y.99 Chain G: D.317, N.328 4 PLIP interactions: 3 interactions with chain E, 1 interactions with chain G Hydrophobic interactions: E:T.97 Hydrogen bonds: E:Y.99, E:Y.99, G:N.328 NAG.7: 1 residues within 4Å: Chain K: N.53 1 PLIP interactions: 1 interactions with chain K Hydrogen bonds: K:N.53 NAG.8: 1 residues within 4Å: Chain K: N.167 No protein-ligand interaction detected (PLIP) NAG.9: 6 residues within 4Å: Chain I: K.44, T.95, T.97, Y.99 Chain K: D.317, N.328 4 PLIP interactions: 3 interactions with chain I, 1 interactions with chain K Hydrophobic interactions: I:T.97 Hydrogen bonds: I:Y.99, I:Y.99, K:N.328

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

McIntire, K.M. et al., Maturation of germinal center B cells after influenza virus vaccination in humans. J.Exp.Med. (2024)

Release Date

2024-06-26

Peptides

05.GC.w2.3C10-H1_SI06 Heavy chain: AEI
05.GC.w2.3C10-H1_SI06 Light chain: BFJ
Hemagglutinin HA1 chain: CGK
Hemagglutinin HA2 chain: DHL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
V

E
S

I
U

B
X

F
T

J
W

C
A

G
G

K
H

D
B

H
I

L
J

05.GC.w2.3C10-H1_SI06 Heavy chain

05.GC.w2.3C10-H1_SI06 Light chain

Hemagglutinin HA1 chain

Hemagglutinin HA2 chain