SMTL ID : 8u5c.1

The mTORC1 cholesterol sensor LYCHOS (GPR155) with cholesterol

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-dimer

Ligands

4 x Y01: CHOLESTEROL HEMISUCCINATE

Y01.1: 20 residues within 4Å: Chain A: F.43, F.50, L.54, Y.57, R.61, M.264, V.265, G.266, K.267, I.268, V.348, A.352, A.355, Y.359, I.386, V.698, F.705, G.709, L.713 Ligands: Y01.2 20 PLIP interactions: 20 interactions with chain A Hydrophobic interactions: A:F.43, A:F.50, A:F.50, A:L.54, A:Y.57, A:I.268, A:V.348, A:A.352, A:A.355, A:Y.359, A:I.386, A:V.698, A:F.705, A:F.705, A:L.713 Hydrogen bonds: A:Y.57, A:G.266, A:K.267, A:I.268 Salt bridges: A:R.61 Y01.2: 17 residues within 4Å: Chain A: R.61, I.268, A.352, V.353, P.356, R.657, L.660, L.664, V.698, F.699, G.702, Q.703, F.705, I.706, G.709, I.710 Ligands: Y01.1 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:I.268, A:A.352, A:V.353, A:P.356, A:L.660, A:F.699, A:F.705, A:I.706, A:I.710 Salt bridges: A:R.61, A:R.657, A:R.657 Y01.3: 20 residues within 4Å: Chain B: F.43, F.50, L.54, Y.57, R.61, M.264, V.265, G.266, K.267, I.268, V.348, A.352, A.355, P.356, Y.359, I.386, F.705, G.709, L.713 Ligands: Y01.4 20 PLIP interactions: 20 interactions with chain B Hydrophobic interactions: B:F.43, B:F.50, B:L.54, B:Y.57, B:Y.57, B:I.268, B:V.348, B:A.352, B:A.355, B:P.356, B:Y.359, B:I.386, B:I.386, B:F.705, B:F.705, B:L.713 Hydrogen bonds: B:G.266, B:K.267, B:I.268 Salt bridges: B:R.61 Y01.4: 16 residues within 4Å: Chain B: Y.57, R.61, I.268, A.352, V.353, P.356, R.657, L.660, L.664, V.698, G.702, F.705, I.706, G.709, I.710 Ligands: Y01.3 13 PLIP interactions: 13 interactions with chain B Hydrophobic interactions: B:I.268, B:A.352, B:V.353, B:P.356, B:L.664, B:V.698, B:F.705, B:I.706, B:I.706, B:I.710 Salt bridges: B:R.61, B:R.657, B:R.657

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bayly-Jones, C. et al., LYCHOS is a human hybrid of a plant-like PIN transporter and a GPCR. Nature (2024)

Release Date

2024-09-18

Peptides

Integral membrane protein GPR155: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

B
F

Membrane

We predict this structure to be a membrane protein.
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Integral membrane protein GPR155