- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.32 Å
- Oligo State
- monomer
- Ligands
- 4 x PO4: PHOSPHATE ION(Non-functional Binders)
PO4.1: 3 residues within 4Å:- Chain A: S.60, Q.61
- Ligands: GOL.13
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:Q.61
PO4.2: 5 residues within 4Å:- Chain A: I.174, D.175, Q.176, G.177
- Ligands: GOL.14
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:I.174, A:D.175, A:Q.176, A:G.177
PO4.3: 3 residues within 4Å:- Chain A: Q.111, N.112, T.113
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:Q.111, A:Q.111, A:T.113, A:T.113
- Water bridges: A:Q.111
PO4.4: 4 residues within 4Å:- Chain A: E.275, Y.286, V.287, D.288
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:D.288, A:D.288, A:D.288
- 17 x GOL: GLYCEROL(Non-functional Binders)
GOL.5: 5 residues within 4Å:- Chain A: L.37, S.38, Y.42, I.144, E.196
Ligand excluded by PLIPGOL.6: 8 residues within 4Å:- Chain A: D.225, L.254, A.255, S.256, D.284, S.313, I.314, L.315
Ligand excluded by PLIPGOL.7: 5 residues within 4Å:- Chain A: G.248, Q.249, K.250, F.319
- Ligands: GOL.8
Ligand excluded by PLIPGOL.8: 2 residues within 4Å:- Chain A: K.250
- Ligands: GOL.7
Ligand excluded by PLIPGOL.9: 8 residues within 4Å:- Chain A: S.88, R.143, D.201, A.203, T.235, Q.236, K.237, K.301
Ligand excluded by PLIPGOL.10: 4 residues within 4Å:- Chain A: N.303, S.304, S.305
- Ligands: MES.22
Ligand excluded by PLIPGOL.11: 6 residues within 4Å:- Chain A: I.258, V.259, Y.306, P.311, Y.312, S.313
Ligand excluded by PLIPGOL.12: 6 residues within 4Å:- Chain A: T.135, I.161, W.162, V.187, L.188
- Ligands: GOL.20
Ligand excluded by PLIPGOL.13: 5 residues within 4Å:- Chain A: V.57, V.58, S.59, S.60
- Ligands: PO4.1
Ligand excluded by PLIPGOL.14: 6 residues within 4Å:- Chain A: L.171, G.172, N.173, I.174, Q.176
- Ligands: PO4.2
Ligand excluded by PLIPGOL.15: 6 residues within 4Å:- Chain A: Q.73, S.74, L.75, T.76, K.77
- Ligands: GOL.17
Ligand excluded by PLIPGOL.16: 12 residues within 4Å:- Chain A: D.39, I.144, S.145, H.146, K.237, D.260, F.261, N.262, L.278, V.299, M.300, K.301
Ligand excluded by PLIPGOL.17: 6 residues within 4Å:- Chain A: T.76, K.77, S.78, E.80, Q.111
- Ligands: GOL.15
Ligand excluded by PLIPGOL.18: 5 residues within 4Å:- Chain A: W.162, R.185, V.187, L.188, T.189
Ligand excluded by PLIPGOL.19: 10 residues within 4Å:- Chain A: S.82, I.83, N.84, K.138, Q.140, D.152, G.153, S.154, Y.156, E.184
Ligand excluded by PLIPGOL.20: 4 residues within 4Å:- Chain A: I.161, W.162, L.163
- Ligands: GOL.12
Ligand excluded by PLIPGOL.21: 6 residues within 4Å:- Chain A: S.265, L.274, S.290, L.291, D.292, Y.296
Ligand excluded by PLIP- 1 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)
MES.22: 8 residues within 4Å:- Chain A: S.145, H.146, N.148, W.234, K.301, A.302, N.303
- Ligands: GOL.10
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:S.145, A:A.302
- Salt bridges: A:K.301
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ogbu, C.P. et al., Structural Basis of Clostridium perfringens Enterotoxin Activation and Oligomerization by Trypsin. Toxins (2023)
- Release Date
- 2023-09-27
- Peptides
- Heat-labile enterotoxin B chain: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.32 Å
- Oligo State
- monomer
- Ligands
- 4 x PO4: PHOSPHATE ION(Non-functional Binders)
- 17 x GOL: GLYCEROL(Non-functional Binders)
- 1 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ogbu, C.P. et al., Structural Basis of Clostridium perfringens Enterotoxin Activation and Oligomerization by Trypsin. Toxins (2023)
- Release Date
- 2023-09-27
- Peptides
- Heat-labile enterotoxin B chain: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
B