SMTL ID : 8u79.1

Crystal Structure of Substrate Binding Protein of Thermus thermophilus TAXI-TRAP protein with L-glutamate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.11 Å

Oligo State

monomer

Ligands

1 x GLU: GLUTAMIC ACID

GLU.1: 16 residues within 4Å: Chain A: G.30, S.31, G.34, V.35, Y.36, G.62, G.63, S.64, Q.82, E.115, S.145, G.146, T.147, Y.190, T.191, V.192 17 PLIP interactions: 16 interactions with chain A, 1 Ligand-Ligand interactions Hydrophobic interactions: A:Y.36, A:Y.36 Hydrogen bonds: A:V.35, A:Y.36, A:Y.36, A:S.64, A:G.146, A:T.147, A:T.147, A:T.191, E.1 Water bridges: A:S.31, A:G.34, A:G.34, A:E.115, A:E.115, A:S.145

1 x EDO: 1,2-ETHANEDIOL

EDO.2: 12 residues within 4Å: Chain A: S.31, V.139, G.141, D.142, T.147, V.171, S.172, A.173, G.176, L.188, F.189, Y.190 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.147 Water bridges: A:D.142, A:D.142

1 x CIT: CITRIC ACID

CIT.3: 6 residues within 4Å: Chain A: T.32, F.37, N.57, A.58, R.59, S.60 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.57, A:A.58, A:S.60 Water bridges: A:S.60

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Antony, I.R. et al., Crystal structure of a glutamate-binding subunit from a TAXI-TRAP transporter. To be published

Release Date

2025-03-19

Peptides

Immunogenic protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Immunogenic protein