SMTL ID : 8u7h.1

Cryo-EM structure of LRRK2 bound to type I inhibitor GNE-7915

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

monomer

Ligands

1 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.1: 16 residues within 4Å: Chain A: N.16, T.17, G.18, G.20, K.21, T.22, T.23, Q.39, S.40, A.41, T.42, A.70, G.71, D.94, H.127, A.164 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:T.17, A:G.18, A:G.20, A:K.21, A:T.22, A:S.40, A:T.42, A:T.42, A:G.71 Salt bridges: A:D.94 pi-Stacking: A:H.127 pi-Cation interactions: A:H.127

1 x A0T: [4-[[4-(ethylamino)-5-(trifluoromethyl)pyrimidin-2-yl]amino]-2-fluoranyl-5-methoxy-phenyl]-morpholin-4-yl-methanone(Non-covalent)

A0T.2: 13 residues within 4Å: Chain A: L.559, V.567, A.578, M.621, E.622, L.623, A.624, S.625, G.627, S.628, R.631, L.675, A.690 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:L.559, A:L.675 Hydrogen bonds: A:A.624, A:A.624

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhu, H. et al., Pharmacology of LRRK2 with type I and II kinase inhibitors revealed by cryo-EM. Cell Discov (2024)

Release Date

2024-01-31

Peptides

non-specific serine/threonine protein kinase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

non-specific serine/threonine protein kinase

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