SMTL ID : 8u7y.1

Structural Basis of Human NOX5 Activation

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-dimer

Ligands

2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Covalent)

FAD.1: 14 residues within 4Å: Chain A: I.265, R.344, H.444, P.445, F.446, T.447, H.461, R.463, Q.465, G.466, Q.467, W.468, T.469, T.548 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:P.445 Hydrogen bonds: A:P.445, A:T.447, A:T.447, A:H.461, A:R.463, A:Q.467, A:W.468, A:T.469, A:T.548 Salt bridges: A:R.344, A:H.444 FAD.8: 15 residues within 4Å: Chain B: D.262, I.265, R.344, H.444, P.445, F.446, T.447, H.461, R.463, Q.465, G.466, Q.467, W.468, T.469, T.548 12 PLIP interactions: 12 interactions with chain B Hydrophobic interactions: B:P.445 Hydrogen bonds: B:P.445, B:T.447, B:T.447, B:H.461, B:R.463, B:Q.467, B:W.468, B:T.469, B:T.548 Salt bridges: B:R.344, B:H.444

2 x D12: DODECANE(Non-covalent)

D12.2: 3 residues within 4Å: Chain A: P.260, Q.263, F.267 No protein-ligand interaction detected (PLIP) D12.9: 3 residues within 4Å: Chain B: P.260, Q.263, F.267 No protein-ligand interaction detected (PLIP)

2 x D10: DECANE(Covalent)

D10.3: 3 residues within 4Å: Chain A: L.196, H.203, L.270 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:L.196, A:H.203, A:L.270 D10.10: 3 residues within 4Å: Chain B: L.196, H.203, L.270 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:L.196, B:H.203, B:L.270

2 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Covalent)

NAP.4: 15 residues within 4Å: Chain A: D.262, I.593, N.594, R.595, M.630, T.631, G.670, R.671, P.672, W.674, S.675, G.695, S.696, P.697, F.719 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:D.262, A:D.262, A:M.630, A:T.631, A:S.675, A:S.696, A:S.696 NAP.11: 14 residues within 4Å: Chain B: D.262, I.593, N.594, R.595, M.630, T.631, G.670, R.671, P.672, W.674, S.675, S.696, P.697, F.719 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:D.262, B:D.262, B:M.630, B:T.631, B:S.675, B:S.696, B:S.696

4 x HEB: HEME B/C(Covalent)

HEB.5: 18 residues within 4Å: Chain A: C.235, I.238, M.242, I.265, H.268, Q.269, G.272, Y.273, V.276, L.332, M.335, F.336, S.339, F.352, H.356, Y.359, W.363, F.384 12 PLIP interactions: 12 interactions with chain A, Hydrophobic interactions: A:I.238, A:I.265, A:Q.269, A:V.276, A:L.332, A:F.336, A:F.352, A:Y.359 Salt bridges: A:K.388 pi-Stacking: A:H.356 Metal complexes: A:H.268, A:H.356 HEB.6: 19 residues within 4Å: Chain A: K.225, G.228, L.231, N.232, S.279, H.282, T.283, H.286, S.322, G.325, V.326, L.328, L.332, L.366, H.369, G.370, P.371, N.372, F.373 15 PLIP interactions: 15 interactions with chain A, Hydrophobic interactions: A:K.225, A:L.231, A:L.231, A:T.283, A:H.286, A:V.326, A:L.328, A:L.332, A:L.366 Hydrogen bonds: A:N.232, A:N.372 Salt bridges: A:K.225 pi-Stacking: A:H.286 Metal complexes: A:H.282, A:H.369 HEB.12: 18 residues within 4Å: Chain B: C.235, I.238, M.242, I.265, H.268, Q.269, G.272, Y.273, V.276, L.332, M.335, F.336, S.339, F.352, H.356, Y.359, W.363, F.384 12 PLIP interactions: 12 interactions with chain B, Hydrophobic interactions: B:I.238, B:I.265, B:Q.269, B:V.276, B:L.332, B:F.336, B:F.352, B:Y.359 Salt bridges: B:K.388 pi-Stacking: B:H.356 Metal complexes: B:H.268, B:H.356 HEB.13: 19 residues within 4Å: Chain B: K.225, G.228, L.231, N.232, S.279, H.282, T.283, H.286, S.322, G.325, V.326, L.328, L.332, L.366, H.369, G.370, P.371, N.372, F.373 15 PLIP interactions: 15 interactions with chain B, Hydrophobic interactions: B:K.225, B:L.231, B:L.231, B:T.283, B:H.286, B:V.326, B:L.328, B:L.332, B:L.366 Hydrogen bonds: B:N.232, B:N.372 Salt bridges: B:K.225 pi-Stacking: B:H.286 Metal complexes: B:H.282, B:H.369

1 x ZN: ZINC ION(Non-covalent)

ZN.7: 6 residues within 4Å: Chain A: C.568, S.570, C.571 Chain B: C.568, S.570, C.571 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain B Metal complexes: A:C.568, A:C.571, B:C.568, B:C.571

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cui, C. et al., Structural basis of human NOX5 activation. Nat Commun (2024)

Release Date

2024-04-24

Peptides

NADPH oxidase 5: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Membrane

We predict this structure to be a membrane protein.
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NADPH oxidase 5

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