SMTL ID : 8uai.1

Crystal structure of hetero hexameric hazelnut allergen Cor a 9

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.92 Å

Oligo State

hetero-2-2-2-mer

Ligands

16 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 4 residues within 4Å: Chain A: R.29, I.30, E.31, D.181 Ligand excluded by PLIP GOL.2: 5 residues within 4Å: Chain A: Q.467 Chain D: R.441, Y.464 Chain E: Q.121 Ligands: GOL.3 Ligand excluded by PLIP GOL.3: 6 residues within 4Å: Chain A: R.460, Y.464 Chain B: Q.119, Q.121 Chain D: Q.467 Ligands: GOL.2 Ligand excluded by PLIP GOL.4: 4 residues within 4Å: Chain B: K.80, D.149, S.150, Q.151 Ligand excluded by PLIP GOL.5: 3 residues within 4Å: Chain B: R.29, K.30, E.31 Ligand excluded by PLIP GOL.7: 10 residues within 4Å: Chain A: Q.166, L.167 Chain C: G.14, E.15, C.16, Q.48, C.49, A.50, N.161, H.367 Ligand excluded by PLIP GOL.8: 5 residues within 4Å: Chain C: E.302, T.303, C.305, S.306 Chain F: I.331 Ligand excluded by PLIP GOL.10: 7 residues within 4Å: Chain D: N.165, Q.166, L.167, D.168 Chain F: G.14, E.15, C.49 Ligand excluded by PLIP GOL.11: 7 residues within 4Å: Chain B: I.304, C.305, S.306 Chain D: Q.429 Chain E: P.90, G.91, E.301 Ligand excluded by PLIP GOL.12: 4 residues within 4Å: Chain E: L.21, F.390, D.391, G.392 Ligand excluded by PLIP GOL.13: 1 residues within 4Å: Chain E: R.460 Ligand excluded by PLIP GOL.14: 7 residues within 4Å: Chain E: R.29, E.31, G.35, T.36, F.58, E.60, Q.151 Ligand excluded by PLIP GOL.15: 13 residues within 4Å: Chain E: E.348, Q.358, H.361, N.363, S.368, I.370, I.402, V.408, K.410, W.419, A.421, K.423, R.430 Ligand excluded by PLIP GOL.16: 8 residues within 4Å: Chain E: Q.380, N.388, D.391 Chain F: S.220, G.221, F.222, D.223 Ligands: GOL.17 Ligand excluded by PLIP GOL.17: 4 residues within 4Å: Chain F: Q.216, S.220 Ligands: GOL.16, GOL.18 Ligand excluded by PLIP GOL.18: 1 residues within 4Å: Ligands: GOL.17 Ligand excluded by PLIP

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.6: 5 residues within 4Å: Chain B: R.126, R.308, L.309, M.310 Chain D: R.318 Ligand excluded by PLIP CL.9: 4 residues within 4Å: Chain D: R.126, R.308, L.309, R.310 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Guo, F. et al., Crystal structure of hetero hexameric 11S seed storage protein of hazelnut. Plant Physiol Biochem. (2024)

Release Date

2024-05-15

Peptides

11S globulin 1: AD
11S globulin 2: BE
11S globulin 3: CF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

D
D

B
B

E
E

C
C

F
F

11S globulin 1

11S globulin 2

11S globulin 3