SMTL ID : 8uan.1

The crystal structure of cobalt-bound human ADO C18S C239S variant at 1.99 Angstrom

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.99 Å

Oligo State

monomer

Ligands

1 x CO: COBALT (II) ION(Non-covalent)

CO.1: 4 residues within 4Å: Chain A: H.116, H.118, H.197 Ligands: GOL.2 6 PLIP interactions: 3 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:H.116, A:H.118, A:H.197, H2O.1, H2O.3, H2O.3

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 8 residues within 4Å: Chain A: F.105, I.113, H.116, D.210, Y.216, C.224, Y.226 Ligands: CO.1 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.210, A:D.210, A:Y.226 GOL.3: 7 residues within 4Å: Chain A: D.138, K.139, D.141, P.191, H.192, N.195, L.196 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.138, A:K.139, A:K.139, A:H.192 GOL.4: 6 residues within 4Å: Chain A: P.88, T.111, S.112, P.114, D.259, F.260 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.112, A:D.259 GOL.5: 4 residues within 4Å: Chain A: R.7, R.16, K.57, L.61 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.7, A:R.7, A:R.16

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, J. et al., Cobalt(II)-Substituted Cysteamine Dioxygenase Oxygenation Proceeds through a Cobalt(III)-Superoxo Complex. J.Am.Chem.Soc. (2024)

Release Date

2024-07-17

Peptides

2-aminoethanethiol dioxygenase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

2-aminoethanethiol dioxygenase

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