SMTL ID : 8uc3.1

Cryo-EM structure of the AlbAB cyclodipeptide oxidase enzyme filament

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-2-mer

Ligands

2 x FMN: FLAVIN MONONUCLEOTIDE(Covalent)

FMN.1: 20 residues within 4Å: Chain A: P.51, T.52, S.54, N.55, T.111, L.114, C.115 Chain B: M.78 Chain D: R.24, T.25, A.26, R.28, G.79, C.135, P.136, V.137, G.138, S.139, S.173, R.175 14 PLIP interactions: 5 interactions with chain A, 9 interactions with chain D Hydrophobic interactions: A:T.111, A:L.114, D:P.136 Hydrogen bonds: A:T.52, A:S.54, A:N.55, D:A.26, D:R.28, D:G.79, D:G.138, D:S.139, D:S.173 Salt bridges: D:R.24, D:R.175 FMN.2: 19 residues within 4Å: Chain A: R.24, T.25, A.26, R.28, G.79, C.135, P.136, V.137, G.138, S.139, S.173, R.175 Chain D: P.51, T.52, S.54, N.55, T.111, L.114, C.115 14 PLIP interactions: 9 interactions with chain A, 5 interactions with chain D Hydrophobic interactions: A:P.136, D:T.111, D:L.114 Hydrogen bonds: A:A.26, A:R.28, A:G.79, A:G.138, A:S.139, A:S.173, D:T.52, D:S.54, D:N.55 Salt bridges: A:R.24, A:R.175

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Andreas, M.P. et al., Cyclodipeptide oxidase is an enzyme filament. Nat Commun (2024)

Release Date

2024-05-15

Peptides

Albonoursin synthase: AD
Protein AlbB: BC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

D
B

B
D

C
C

Albonoursin synthase

Protein AlbB