SMTL ID : 8uc5.2 (2 other biounits)

Apo X-ray crystal structure of Cyclophilin D with a surface entropy reduction mutation (K175I)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.43 Å

Oligo State

monomer

Ligands

3 x DMS: DIMETHYL SULFOXIDE

DMS.1: 6 residues within 4Å: Chain A: R.56, F.61, Q.64, F.114, L.123, H.127 1 PLIP interactions: 1 interactions with chain A pi-Cation interactions: A:F.114 DMS.2: 5 residues within 4Å: Chain A: H.55, N.72, S.150, G.151, R.152 No protein-ligand interaction detected (PLIP) DMS.3: 1 residues within 4Å: Chain A: A.104 No protein-ligand interaction detected (PLIP)

1 x NA: SODIUM ION

NA.4: 3 residues within 4Å: Chain A: Y.8, D.161, C.162 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.8, A:C.162, A:C.162

1 x CL: CHLORIDE ION

CL.5: 2 residues within 4Å: Chain A: G.105, K.126 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kreitler, D.F. et al., Apo X-ray crystal structure of Cyclophilin D with a surface entropy reduction mutation (K175I). To Be Published

Release Date

2024-09-04

Peptides

Peptidyl-prolyl cis-trans isomerase F, mitochondrial: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Peptidyl-prolyl cis-trans isomerase F, mitochondrial

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