SMTL ID : 8udc.1

Crystal structure of TcPINK1 in complex with CYC116

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.10 Å

Oligo State

monomer

Ligands

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.1: 4 residues within 4Å: Chain A: R.19, E.20, S.23, K.436 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.23, A:S.23, A:K.436, A:K.436

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 5 residues within 4Å: Chain A: S.23, K.26, P.130, H.212, H.216 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.23, A:H.212 Salt bridges: A:K.26, A:H.216

1 x WCK: (4P)-4-(2-amino-4-methyl-1,3-thiazol-5-yl)-N-[4-(morpholin-4-yl)phenyl]pyrimidin-2-amine

WCK.3: 14 residues within 4Å: Chain A: I.53, A.54, V.61, A.79, K.81, M.179, K.180, Y.182, D.183, C.184, N.185, S.188, L.229, D.244 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:I.53, A:A.54, A:V.61, A:L.229 Hydrogen bonds: A:Y.182, A:Y.182, A:S.188, A:D.244

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shomali, T. et al., Structural Characterization of a small-molecule inhibitor of PINK1, a precursor tool compound for the study of Parkinson's disease. To Be Published

Release Date

2024-04-17

Peptides

Serine/threonine-protein kinase Pink1, mitochondrial: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Serine/threonine-protein kinase Pink1, mitochondrial