SMTL ID : 8udz.1

The Structure of LTBP-49247 Fab Bound to TGFbeta1 Small Latent Complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.21 Å

Oligo State

hetero-2-2-2-mer

Ligands

1 x NAG- NAG- BMA- MAN- MAN: alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-MAN.1: 4 residues within 4Å: Chain B: E.46, L.49, A.50, N.53 No protein-ligand interaction detected (PLIP)

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 3 residues within 4Å: Chain A: E.46, A.50, N.53 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:A.50 Hydrogen bonds: A:N.53, A:R.56 NAG.3: 2 residues within 4Å: Chain B: N.107, E.110 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.107, B:E.110

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jackson, J.W. et al., An antibody that inhibits TGF-beta 1 release from latent extracellular matrix complexes attenuates the progression of renal fibrosis. Sci.Signal. (2024)

Release Date

2024-07-17

Peptides

Transforming growth factor beta-1 proprotein: AB
LTBP-49247 Fab Heavy Chain: CE
LTBP-49247 Fab Light Chain: DF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

E
E

D
D

F
F

Transforming growth factor beta-1 proprotein

LTBP-49247 Fab Heavy Chain

LTBP-49247 Fab Light Chain