SMTL ID : 8ufa.1

Eastern equine encephalitis virus (PE-6) VLP (asymmetric unit)

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-4-4-4-mer

Ligands

8 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 4 residues within 4Å: Chain A: V.34, N.134, W.142, S.144 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.134 NAG.2: 2 residues within 4Å: Chain B: T.313, N.315 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:T.313, B:N.315 NAG.3: 4 residues within 4Å: Chain D: V.34, N.134, W.142, S.144 No protein-ligand interaction detected (PLIP) NAG.4: 4 residues within 4Å: Chain E: K.276, I.281, T.313, N.315 No protein-ligand interaction detected (PLIP) NAG.5: 4 residues within 4Å: Chain G: M.132, N.134, W.142, S.144 1 PLIP interactions: 1 interactions with chain G Hydrogen bonds: G:N.134 NAG.6: 4 residues within 4Å: Chain H: K.276, I.281, T.313, N.315 No protein-ligand interaction detected (PLIP) NAG.7: 4 residues within 4Å: Chain J: V.34, N.134, W.142, S.144 1 PLIP interactions: 1 interactions with chain J Hydrogen bonds: J:N.134 NAG.8: 3 residues within 4Å: Chain K: I.281, T.313, N.315 1 PLIP interactions: 1 interactions with chain K Hydrophobic interactions: K:I.281

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Adams, L.J. et al., Structural and functional basis of VLDLR usage by Eastern equine encephalitis virus. Cell (2024)

Release Date

2024-01-17

Peptides

E1 protein: ADGJ
E2 protein: BEHK
Capsid protein: CFIL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

D
D

G
G

J
J

B
B

E
E

H
H

K
K

C
C

F
F

I
I

L
L

Membrane

We predict this structure to be a membrane protein.
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E1 protein

E2 protein

Capsid protein

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