SMTL ID : 8ufd.1

Multidrug efflux pump MtEfpA bound with inhibitor BRD8000.3

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-dimer

Ligands

4 x PTY: PHOSPHATIDYLETHANOLAMINE

PTY.1: 15 residues within 4Å: Chain A: S.69, V.98, F.101, G.102, C.250, A.253, V.254, F.257, G.274, A.277, A.281, M.441, S.444, L.445, P.448 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:V.254, A:F.257, A:F.257, A:A.277, A:A.281, A:L.445, A:P.448 Hydrogen bonds: A:S.69, A:S.69 PTY.2: 21 residues within 4Å: Chain A: Q.62, T.187, A.188, S.191, V.192, I.313, M.320, F.321, T.324, I.327, F.349, M.353, G.387, M.391, P.404, I.405, V.416, T.420, Q.443, L.491 Ligands: WJI.3 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:T.187, A:I.313, A:T.324, A:I.327, A:F.349, A:F.349, A:F.349, A:V.416, A:L.491, A:L.491 Hydrogen bonds: A:S.191 PTY.4: 15 residues within 4Å: Chain B: S.69, V.98, F.101, G.102, C.250, A.253, V.254, F.257, G.274, A.277, A.281, M.441, S.444, L.445, P.448 9 PLIP interactions: 9 interactions with chain B Hydrophobic interactions: B:V.254, B:F.257, B:F.257, B:A.277, B:A.281, B:L.445, B:P.448 Hydrogen bonds: B:S.69, B:S.69 PTY.5: 21 residues within 4Å: Chain B: Q.62, T.187, A.188, S.191, V.192, I.313, M.320, F.321, T.324, I.327, F.349, M.353, G.387, M.391, P.404, I.405, V.416, T.420, Q.443, L.491 Ligands: WJI.6 11 PLIP interactions: 11 interactions with chain B Hydrophobic interactions: B:T.187, B:I.313, B:T.324, B:I.327, B:F.349, B:F.349, B:F.349, B:V.416, B:L.491, B:L.491 Hydrogen bonds: B:S.191

2 x WJI: (1S,3S)-N-[6-bromo-5-(pyrimidin-2-yl)pyridin-2-yl]-2,2-dimethyl-3-(2-methylpropyl)cyclopropane-1-carboxamide

WJI.3: 18 residues within 4Å: Chain A: A.316, V.319, T.373, I.374, G.377, Y.378, L.380, I.412, A.415, V.416, L.419, A.498, I.499, V.501, G.502, L.506 Chain B: F.381 Ligands: PTY.2 10 PLIP interactions: 8 interactions with chain A, 2 interactions with chain B Hydrophobic interactions: A:T.373, A:I.374, A:Y.378, A:I.412, A:A.415, A:V.416, A:I.499, A:L.506, B:F.381, B:F.381 WJI.6: 18 residues within 4Å: Chain A: F.381 Chain B: A.316, V.319, T.373, I.374, G.377, Y.378, L.380, I.412, A.415, V.416, L.419, A.498, I.499, V.501, G.502, L.506 Ligands: PTY.5 9 PLIP interactions: 1 interactions with chain A, 8 interactions with chain B Hydrophobic interactions: A:F.381, B:T.373, B:I.374, B:Y.378, B:I.412, B:A.415, B:V.416, B:I.499, B:L.506

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, S. et al., Structures of the Mycobacterium tuberculosis efflux pump EfpA reveal the mechanisms of transport and inhibition. Nat Commun (2024)

Release Date

2024-09-11

Peptides

Integral membrane efflux protein EFPA: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Membrane

We predict this structure to be a membrane protein.
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Integral membrane efflux protein EFPA

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