SMTL ID : 8ufl.1 (1 other biounit)

Crystal Structure of SARS-Unique Domain (SUD) of Nsp3 from SARS coronavirus

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.51 Å

Oligo State

monomer

Ligands

9 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 1 residues within 4Å: Chain A: E.113 Ligand excluded by PLIP CL.2: 1 residues within 4Å: Chain A: K.137 Ligand excluded by PLIP CL.3: 1 residues within 4Å: Chain A: K.210 Ligand excluded by PLIP CL.4: 2 residues within 4Å: Chain A: G.187, I.188 Ligand excluded by PLIP CL.5: 4 residues within 4Å: Chain A: A.133, P.134, N.135, A.136 Ligand excluded by PLIP CL.6: 1 residues within 4Å: Chain A: Y.225 Ligand excluded by PLIP CL.7: 2 residues within 4Å: Chain A: D.62, V.63 Ligand excluded by PLIP CL.8: 1 residues within 4Å: Chain A: Y.37 Ligand excluded by PLIP CL.9: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP

5 x SO4: SULFATE ION(Non-functional Binders)

SO4.10: 4 residues within 4Å: Chain A: T.15, L.16, E.17, R.45 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:L.16, A:E.17 Water bridges: A:E.17, A:R.45, A:R.45 Salt bridges: A:R.45 SO4.11: 3 residues within 4Å: Chain A: T.209, N.212, K.243 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.212 Salt bridges: A:K.243 SO4.12: 1 residues within 4Å: Chain A: K.123 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:K.123 SO4.13: 3 residues within 4Å: Chain A: T.65, S.66, G.67 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.67 SO4.14: 2 residues within 4Å: Chain A: P.94, V.95 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:V.95

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Minasov, G. et al., Crystal Structure of SARS-Unique Domain (SUD) of Nsp3 from SARS coronavirus. To Be Published

Release Date

2023-10-18

Peptides

Papain-like protease nsp3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Papain-like protease nsp3

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