SMTL ID : 8ugq.1

CryoEM Structure of Maize Streak Virus (MSV) - Geminivirus

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-11-mer

Ligands

11 x DC- DG- DA- DA- DC- DC- DC- DC- DA: DNA (5'-D(P*CP*GP*AP*AP*CP*CP*CP*CP*A)-3')(Non-covalent)

DC-DG-DA-DA-DC-DC-DC-DC-DA.1: 7 residues within 4Å: Chain A: R.30, S.39, I.42, K.85, F.190, R.235, Y.237 Protein-ligand interaction information (PLIP) not available DC-DG-DA-DA-DC-DC-DC-DC-DA.2: 16 residues within 4Å: Chain B: K.29, D.36, S.39, L.40, I.42, K.85, F.190, R.235, Y.237 Chain C: K.34, K.142, R.145, H.149, V.153, R.155, R.156 Protein-ligand interaction information (PLIP) not available DC-DG-DA-DA-DC-DC-DC-DC-DA.3: 13 residues within 4Å: Chain C: S.39, I.42, K.85, F.190, R.235, Y.237 Chain D: K.34, K.142, R.145, H.149, V.153, R.155, R.156 Protein-ligand interaction information (PLIP) not available DC-DG-DA-DA-DC-DC-DC-DC-DA.4: 14 residues within 4Å: Chain D: S.39, I.42, K.85, F.190, R.235, Y.237 Chain E: R.30, K.34, K.142, R.145, H.149, V.153, R.155, R.156 Protein-ligand interaction information (PLIP) not available DC-DG-DA-DA-DC-DC-DC-DC-DA.5: 13 residues within 4Å: Chain E: S.39, I.42, K.85, F.190, R.235, Y.237 Chain F: K.34, K.142, R.145, H.149, V.153, R.155, R.156 Protein-ligand interaction information (PLIP) not available DC-DG-DA-DA-DC-DC-DC-DC-DA.6: 14 residues within 4Å: Chain B: K.142, R.145, H.149, V.153, R.155, R.156, G.193 Chain F: R.30, S.39, I.42, K.85, F.190, R.235, Y.237 Protein-ligand interaction information (PLIP) not available DC-DG-DA-DA-DC-DC-DC-DC-DA.7: 12 residues within 4Å: Chain G: S.39, I.42, K.85, F.190, R.235, Y.237 Chain H: K.142, R.145, H.149, V.153, R.155, R.156 Protein-ligand interaction information (PLIP) not available DC-DG-DA-DA-DC-DC-DC-DC-DA.8: 9 residues within 4Å: Chain H: I.42, K.85, F.190, R.235, Y.237 Chain I: K.142, R.145, C.148, H.149 Protein-ligand interaction information (PLIP) not available DC-DG-DA-DA-DC-DC-DC-DC-DA.9: 12 residues within 4Å: Chain I: S.39, L.40, F.190, R.235, Y.237 Chain J: K.34, K.142, R.145, H.149, V.153, R.155, R.156 Protein-ligand interaction information (PLIP) not available DC-DG-DA-DA-DC-DC-DC-DC-DA.10: 14 residues within 4Å: Chain J: K.29, S.39, I.42, K.85, F.190, R.235, Y.237 Chain K: K.34, K.142, R.145, H.149, V.153, R.155, R.156 Protein-ligand interaction information (PLIP) not available DC-DG-DA-DA-DC-DC-DC-DC-DA.11: 13 residues within 4Å: Chain G: K.34, K.142, R.145, H.149, V.153, R.155, R.156 Chain K: S.39, I.42, K.85, F.190, R.235, Y.237 Protein-ligand interaction information (PLIP) not available

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

McKenna, R. et al., The two states of Maize Streak Virus (MSV) Geminivirus Architecture. To Be Published

Release Date

2023-11-22

Peptides

Capsid protein: ABCDEFGHIJK

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

K
K

Capsid protein

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