SMTL ID : 8ugu.3 (3 other biounits)

Crystal structure of the second bromodomain of human BRD2 in complex with 4IND

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.34 Å

Oligo State

monomer

Ligands

2 x PG0: 2-(2-METHOXYETHOXY)ETHANOL(Non-functional Binders)

PG0.1: 2 residues within 4Å: Chain A: P.91, R.100 No protein-ligand interaction detected (PLIP) PG0.2: 4 residues within 4Å: Chain A: K.101, D.104, V.105, F.108 No protein-ligand interaction detected (PLIP)

1 x 59E: methyl [(4S)-6-(1H-indol-4-yl)-8-methoxy-1-methyl-4H-[1,2,4]triazolo[4,3-a][1,4]benzodiazepin-4-yl]acetate(Non-covalent)

59E.3: 9 residues within 4Å: Chain A: W.30, P.31, F.32, V.36, L.43, C.85, N.89, V.95, M.98 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:W.30, A:W.30, A:P.31, A:F.32, A:V.36, A:V.95, A:V.95 Hydrogen bonds: A:N.89 Water bridges: A:Y.46, A:H.93, A:V.95

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chowdhury, N. et al., Development of synthetic molecules for bromodomain-selective recruitment of transcriptional regulators to targeted genomic loci. to be published

Release Date

2025-04-02

Peptides

Bromodomain-containing protein 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

Bromodomain-containing protein 2

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