SMTL ID : 8uhv.1

X-ray crystal structure of Toxoplasma gondii Apo GalNAc-T3

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

monomer

Ligands

7 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 13 residues within 4Å: Chain A: L.255, H.261, E.264, H.266, Q.267, D.419, F.469, V.472, H.474, M.476, D.481, E.482, C.494 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.267, A:D.419, A:H.474, A:D.481 GOL.2: 6 residues within 4Å: Chain A: R.86, T.87, A.88, P.89, K.242, H.243 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:H.243, A:H.243 Water bridges: A:A.88 GOL.3: 6 residues within 4Å: Chain A: I.248, L.252, E.260, H.261, S.262, A.290 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.262, A:S.262, A:A.290 GOL.4: 6 residues within 4Å: Chain A: E.264, G.265, H.266, R.495, G.496, T.497 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:E.264, A:E.264, A:G.265, A:H.266, A:G.496 GOL.5: 5 residues within 4Å: Chain A: T.285, W.326, W.409, N.413, V.414 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.285 GOL.6: 8 residues within 4Å: Chain A: D.374, W.377, P.548, T.550, F.551, T.552, F.553, P.554 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.550, A:T.552, A:T.552 GOL.8: 7 residues within 4Å: Chain A: H.266, R.270, K.471, V.472, G.496, T.497, W.501 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.270, A:R.270, A:K.471, A:G.496

2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.7: 7 residues within 4Å: Chain A: T.505, S.507, Q.509, M.511, C.531, D.532, D.533 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.509, A:D.533, A:D.533 PEG.9: 5 residues within 4Å: Chain A: G.36, R.86, T.87, A.88, P.211 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.36

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kumar, P. et al., A Toxoplasma gondii O-glycosyltransferase that modulates bradyzoite cyst wall rigidity is distinct from host homologues. Nat Commun (2024)

Release Date

2024-05-15

Peptides

Glycosyl transferase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Glycosyl transferase

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