SMTL ID : 8ukv.1 (1 other biounit)

Crystal structure of nanobody/VHH domain of 34E5 in complex with the extracellular region of the epidermal growth factor variant III (EGFRvIII)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.94 Å

Oligo State

hetero-1-1-mer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 11 residues within 4Å: Chain A: E.53, D.56, S.57, L.58, S.59, N.61, T.63, N.64, V.83, T.91, T.93 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.56

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 1 residues within 4Å: Chain A: N.70 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bagchi, A. et al., Structural insights into the role and targeting of EGFRvIII. Structure (2024)

Release Date

2024-06-19

Peptides

Epidermal growth factor receptor: A
Nanobody/VHH domain 34E5: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

Epidermal growth factor receptor

Nanobody/VHH domain 34E5

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