SMTL ID : 8ukw.1 (1 other biounit)

Crystal structure the extracellular region of the epidermal growth factor receptor variant III (EGFRvIII) at pH 5.0

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.39 Å

Oligo State

monomer

Ligands

1 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.1: 10 residues within 4Å: Chain A: D.56, S.57, L.58, S.59, N.61, N.64, V.83, D.88, T.91, T.93 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.56, A:D.56, A:D.56

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 2 residues within 4Å: Chain A: K.69, N.70 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.69 NAG.3: 4 residues within 4Å: Chain A: R.236, N.237, D.246, K.247 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:K.247 Water bridges: A:N.237

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bagchi, A. et al., Structural insights into the role and targeting of EGFRvIII. Structure (2024)

Release Date

2024-06-12

Peptides

Epidermal growth factor receptor: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Epidermal growth factor receptor

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