- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- homo-dimer
- Ligands
- 4 x MG: MAGNESIUM ION(Non-covalent)
MG.1: 1 residues within 4Å:- Chain A: G.100
No protein-ligand interaction detected (PLIP)MG.2: 3 residues within 4Å:- Chain A: D.96, D.117, D.121
3 PLIP interactions:3 interactions with chain A- Metal complexes: A:D.96, A:D.96, A:D.121
MG.7: 4 residues within 4Å:- Chain B: D.96, D.99, G.100, D.117
3 PLIP interactions:3 interactions with chain B- Metal complexes: B:D.96, B:D.99, B:D.117
MG.8: 4 residues within 4Å:- Chain B: Y.92, D.96, D.117, D.121
5 PLIP interactions:5 interactions with chain B- Metal complexes: B:D.96, B:D.96, B:D.117, B:D.121, B:D.121
- 6 x PCW: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE(Non-covalent)
PCW.3: 15 residues within 4Å:- Chain A: F.3, R.307, V.321, F.323, L.326, I.330, V.333, L.334, M.356, L.360
- Chain B: L.362, A.363, Y.374
- Ligands: PCW.4, PCW.5
11 PLIP interactions:10 interactions with chain A, 1 interactions with chain B- Hydrophobic interactions: A:F.323, A:I.330, A:V.333, A:L.334, A:L.334, A:L.360, B:L.362
- Hydrogen bonds: A:V.321
- Salt bridges: A:R.307, A:R.307
- pi-Cation interactions: A:F.3
PCW.4: 16 residues within 4Å:- Chain A: M.338, D.343, Y.344, Q.345, S.348, I.349, A.352, M.356
- Chain B: P.71, Y.72, S.290, L.291, W.355, L.362
- Ligands: PCW.3, PCW.5
10 PLIP interactions:6 interactions with chain B, 4 interactions with chain A- Hydrophobic interactions: B:P.71, B:Y.72, B:W.355, B:W.355, B:L.362, A:I.349, A:A.352
- Hydrogen bonds: B:Y.72, A:Q.345, A:S.348
PCW.5: 20 residues within 4Å:- Chain B: L.53, F.56, L.67, F.116, C.119, I.120, I.123, L.127, F.299, L.362, H.365, G.366, I.369, N.370, I.373, Y.383, A.384, S.386
- Ligands: PCW.3, PCW.4
14 PLIP interactions:14 interactions with chain B- Hydrophobic interactions: B:L.53, B:F.56, B:L.67, B:F.116, B:F.116, B:I.120, B:I.123, B:L.127, B:F.299, B:F.299, B:L.362, B:I.369
- Hydrogen bonds: B:A.384
- pi-Cation interactions: B:Y.383
PCW.9: 14 residues within 4Å:- Chain A: L.362, M.367, Y.374
- Chain B: F.3, F.4, R.307, V.321, F.323, I.330, L.334, M.356, L.360
- Ligands: PCW.10, PCW.11
10 PLIP interactions:8 interactions with chain B, 2 interactions with chain A- Hydrophobic interactions: B:F.323, B:F.323, B:L.334, B:L.334, B:L.360, A:L.362, A:L.362
- Salt bridges: B:R.307, B:R.307
- pi-Cation interactions: B:F.3
PCW.10: 19 residues within 4Å:- Chain A: L.67, P.71, Y.72, L.291, L.295, W.355, L.362
- Chain B: L.334, M.338, D.343, Y.344, Q.345, S.348, I.349, A.352, L.353, M.356
- Ligands: PCW.9, PCW.11
11 PLIP interactions:5 interactions with chain B, 6 interactions with chain A- Hydrophobic interactions: B:I.349, B:A.352, B:L.353, A:L.67, A:P.71, A:Y.72, A:L.295, A:W.355
- Hydrogen bonds: B:Q.345, B:S.348, A:Y.72
PCW.11: 19 residues within 4Å:- Chain A: F.56, V.63, L.67, F.116, C.119, I.120, I.123, L.127, F.299, L.362, H.365, G.366, I.369, N.370, Y.383, A.384, L.385
- Ligands: PCW.9, PCW.10
15 PLIP interactions:15 interactions with chain A- Hydrophobic interactions: A:F.56, A:V.63, A:L.67, A:F.116, A:I.120, A:I.123, A:L.127, A:F.299, A:L.362, A:I.369, A:I.369, A:L.385
- Hydrogen bonds: A:A.384, A:L.385
- pi-Cation interactions: A:Y.383
- 2 x DGA: DIACYL GLYCEROL(Non-covalent)
DGA.6: 19 residues within 4Å:- Chain A: D.121, N.124, T.125, S.128, M.129, V.132, S.147, I.151, S.154, F.155, S.158, G.175, P.176, G.179, I.180, V.182, L.183, M.221, C.225
7 PLIP interactions:7 interactions with chain A- Hydrophobic interactions: A:V.132, A:V.132, A:I.180, A:V.182, A:L.183
- Hydrogen bonds: A:T.125, A:S.158
DGA.12: 17 residues within 4Å:- Chain B: N.124, T.125, S.128, M.129, V.132, F.146, S.147, I.151, S.154, F.155, V.182, L.183, M.221, Y.222, F.224, C.225, T.226
8 PLIP interactions:8 interactions with chain B- Hydrophobic interactions: B:M.129, B:V.132, B:F.146, B:L.183, B:L.183, B:Y.222, B:F.224
- Hydrogen bonds: B:S.154
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Roberts, J.R. et al., Structural basis for catalysis and selectivity of phospholipid synthesis by eukaryotic choline-phosphotransferase. Nat Commun (2025)
- Release Date
- 2024-10-23
- Peptides
- Cholinephosphotransferase 1: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B - Membrane
-
We predict this structure to be a membrane protein.
- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- homo-dimer
- Ligands
- 4 x MG: MAGNESIUM ION(Non-covalent)
- 6 x PCW: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE(Non-covalent)
- 2 x DGA: DIACYL GLYCEROL(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Roberts, J.R. et al., Structural basis for catalysis and selectivity of phospholipid synthesis by eukaryotic choline-phosphotransferase. Nat Commun (2025)
- Release Date
- 2024-10-23
- Peptides
- Cholinephosphotransferase 1: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B - Membrane
-
We predict this structure to be a membrane protein.