SMTL ID : 8um5.1

X-ray structure of human SHIP1 Ptase-C2 domains covalently bound to TREAT-AD (TAD) compound TAD-58547

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.86 Å

Oligo State

monomer

Ligands

1 x X3F: 5-(1,4-oxazepan-4-yl)-6-propanoylpyridine-2-carbonitrile(Covalent)

X3F.1: 10 residues within 4Å: Chain A: H.110, C.112, F.134, M.135, S.140, G.172, D.173, K.174, K.175, F.185 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:D.173 Hydrogen bonds: A:K.174 Water bridges: A:G.172, A:G.172, A:D.173

3 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.2: 9 residues within 4Å: Chain A: G.138, T.139, T.186, V.289, T.319, D.405, Q.406, H.407 Ligands: DMS.3 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.319 Water bridges: A:T.139 DMS.3: 7 residues within 4Å: Chain A: Y.286, H.359, S.360, S.361, H.407, L.409 Ligands: DMS.2 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.361 DMS.4: 7 residues within 4Å: Chain A: H.183, H.238, K.284, P.287, C.425, T.441, P.442 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.284, A:T.441

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hamdani, A.K. et al., X-ray structure of human SHIP1 Ptase-C2 domains covalently bound to TREAT-AD (TAD) compound TAD-58547. To Be Published

Release Date

2024-10-23

Peptides

Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 1

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