SMTL ID : 8umz.2 (1 other biounit)

Crystal Structure of Engineered Mouse Protocadherin-15 EC4-EC7 Connection

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.63 Å

Oligo State

monomer

Ligands

5 x CA: CALCIUM ION(Non-covalent)

CA.1: 5 residues within 4Å: Chain A: N.4, Q.6, D.45, D.47, D.100 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:Q.6, A:D.45, A:D.47, A:D.100, H2O.3 CA.2: 7 residues within 4Å: Chain A: E.21, E.87, D.116, A.117, D.119, D.152 Ligands: NA.6 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:E.21, A:E.87, A:E.87, A:D.116, A:D.152 CA.3: 6 residues within 4Å: Chain A: N.118, N.120, D.150, D.152, N.156, D.200 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:N.120, A:D.150, A:D.150, A:D.152, A:N.156 CA.4: 7 residues within 4Å: Chain A: E.136, E.187, D.218, I.219, D.221, E.224 Ligands: CA.5 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:E.136, A:E.187, A:D.218, A:I.219, A:D.221 CA.5: 6 residues within 4Å: Chain A: E.136, E.137, N.185, E.187, E.224 Ligands: CA.4 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.136, A:E.137, A:E.187, A:E.224, H2O.3

1 x NA: SODIUM ION(Non-functional Binders)

NA.6: 5 residues within 4Å: Chain A: E.21, D.85, E.87, D.119 Ligands: CA.2 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.85, A:E.87

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

De-la-Torre, P. et al., Crystal Structure of Engineered Mouse Protocadherin-15 EC4-EC7 Connection. To be published

Release Date

2024-11-13

Peptides

Protocadherin-15 EC4-EC7: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Protocadherin-15 EC4-EC7

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