SMTL ID : 8un7.1

Single particle analysis of recombinant human MFAP4

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-octamer

Ligands

16 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 3 residues within 4Å: Chain A: F.66, N.67, S.69 Ligand excluded by PLIP NAG.2: 2 residues within 4Å: Chain A: E.116, N.117 Ligand excluded by PLIP NAG.4: 3 residues within 4Å: Chain B: F.66, N.67, S.69 Ligand excluded by PLIP NAG.5: 2 residues within 4Å: Chain B: E.116, N.117 Ligand excluded by PLIP NAG.7: 3 residues within 4Å: Chain C: F.66, N.67, S.69 Ligand excluded by PLIP NAG.8: 2 residues within 4Å: Chain C: E.116, N.117 Ligand excluded by PLIP NAG.10: 3 residues within 4Å: Chain D: F.66, N.67, S.69 Ligand excluded by PLIP NAG.11: 2 residues within 4Å: Chain D: E.116, N.117 Ligand excluded by PLIP NAG.13: 3 residues within 4Å: Chain E: F.66, N.67, S.69 Ligand excluded by PLIP NAG.14: 2 residues within 4Å: Chain E: E.116, N.117 Ligand excluded by PLIP NAG.16: 3 residues within 4Å: Chain F: F.66, N.67, S.69 Ligand excluded by PLIP NAG.17: 2 residues within 4Å: Chain F: E.116, N.117 Ligand excluded by PLIP NAG.19: 3 residues within 4Å: Chain G: F.66, N.67, S.69 Ligand excluded by PLIP NAG.20: 2 residues within 4Å: Chain G: E.116, N.117 Ligand excluded by PLIP NAG.22: 3 residues within 4Å: Chain H: F.66, N.67, S.69 Ligand excluded by PLIP NAG.23: 2 residues within 4Å: Chain H: E.116, N.117 Ligand excluded by PLIP

8 x CA: CALCIUM ION(Non-covalent)

CA.3: 5 residues within 4Å: Chain A: S.166, T.167, D.171, Q.172, F.175 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:S.166, A:T.167 CA.6: 5 residues within 4Å: Chain B: S.166, T.167, D.171, Q.172, F.175 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:S.166, B:T.167 CA.9: 5 residues within 4Å: Chain C: S.166, T.167, D.171, Q.172, F.175 2 PLIP interactions: 2 interactions with chain C Metal complexes: C:S.166, C:T.167 CA.12: 5 residues within 4Å: Chain D: S.166, T.167, D.171, Q.172, F.175 2 PLIP interactions: 2 interactions with chain D Metal complexes: D:S.166, D:T.167 CA.15: 5 residues within 4Å: Chain E: S.166, T.167, D.171, Q.172, F.175 2 PLIP interactions: 2 interactions with chain E Metal complexes: E:S.166, E:T.167 CA.18: 5 residues within 4Å: Chain F: S.166, T.167, D.171, Q.172, F.175 2 PLIP interactions: 2 interactions with chain F Metal complexes: F:S.166, F:T.167 CA.21: 5 residues within 4Å: Chain G: S.166, T.167, D.171, Q.172, F.175 2 PLIP interactions: 2 interactions with chain G Metal complexes: G:S.166, G:T.167 CA.24: 5 residues within 4Å: Chain H: S.166, T.167, D.171, Q.172, F.175 2 PLIP interactions: 2 interactions with chain H Metal complexes: H:S.166, H:T.167

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wozny, M.R. et al., Microfibril-associated glycoprotein 4 forms octamers that mediate interactions with elastogenic proteins and cells. Nat Commun (2024)

Release Date

2024-05-22

Peptides

Microfibril-associated glycoprotein 4: ABCDEFGH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
D

C
B

D
E

E
C

F
F

G
G

H
H

Microfibril-associated glycoprotein 4