SMTL ID : 8uni.1

LSD1-CoREST with N-formyl-FAD in complex with H3K4M histone tail

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.40 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x HUF: [[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2R,3S,4S)-5-[5-methanoyl-7,8-dimethyl-2,4-bis(oxidanylidene)-1H-benzo[g]pteridin-10-yl]-2,3,4-tris(oxidanyl)pentyl] hydrogen phosphate(Non-covalent)

HUF.1: 36 residues within 4Å: Chain A: G.304, G.306, V.307, S.308, L.326, E.327, A.328, R.329, G.334, R.335, L.348, G.349, A.350, M.351, V.352, T.607, A.608, V.609, T.643, L.644, P.645, V.648, V.656, L.678, K.680, W.770, W.775, S.779, Y.780, G.819, E.820, A.828, T.829, V.830, A.833 Chain C: M.4 22 PLIP interactions: 22 interactions with chain A Hydrogen bonds: A:V.307, A:S.308, A:S.308, A:S.308, A:A.328, A:R.329, A:R.329, A:G.333, A:R.335, A:M.351, A:V.352, A:V.352, A:V.609, A:V.609, A:E.820, A:E.820, A:A.828, A:A.828, A:V.830 Salt bridges: A:R.335, A:R.335 pi-Stacking: A:Y.780

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Caroli, J. et al., Distal drug resistance mutations promote covalent inhibitor-adduct Grob fragmentation in LSD1. To Be Published

Release Date

2025-02-05

Peptides

Lysine-specific histone demethylase 1A: A
REST corepressor 1: B
Histone H3 (Fragment): C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Lysine-specific histone demethylase 1A

REST corepressor 1

Histone H3 (Fragment)

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