SMTL ID : 8uok.1

Crystal structure of human NUAK1-MARK3 (7 mutations) kinase domain chimera bound with small molecule inhibitor #31

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

homo-dimer

Ligands

2 x X5N: (6P)-6-[(4R)-imidazo[1,2-a]pyridin-3-yl]-4-(piperidin-4-yl)-2H-pyrido[3,2-b][1,4]oxazin-3(4H)-one(Non-covalent)

X5N.1: 13 residues within 4Å: Chain A: L.20, A.41, K.43, I.74, M.90, E.91, Y.92, A.93, E.97, E.140, N.141, L.143, D.154 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:L.20, A:I.74, A:Y.92 Hydrogen bonds: A:A.93, A:E.97, A:D.154 X5N.6: 12 residues within 4Å: Chain B: L.20, A.41, K.43, M.90, E.91, Y.92, A.93, E.97, E.140, N.141, L.143, D.154 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:L.20, B:L.20, B:Y.92 Hydrogen bonds: B:A.93, B:D.154

8 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 3 residues within 4Å: Chain A: K.227, Y.228, I.230 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.228 EDO.3: 2 residues within 4Å: Chain A: I.230, E.239 2 PLIP interactions: 2 interactions with chain A Water bridges: A:E.239, A:E.239 EDO.4: 6 residues within 4Å: Chain A: P.179, E.180, Q.183, K.185, L.248, P.250 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.185 Water bridges: A:K.185 EDO.5: 6 residues within 4Å: Chain A: K.57, R.60, R.135, F.157, D.168, F.170 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:K.57, A:R.60, A:R.60, A:R.135, A:R.135, A:D.168 EDO.7: 3 residues within 4Å: Chain B: K.227, Y.228, I.230 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:Y.228 EDO.8: 1 residues within 4Å: Chain B: E.239 1 PLIP interactions: 1 interactions with chain B Water bridges: B:E.239 EDO.9: 5 residues within 4Å: Chain B: P.179, Q.183, K.185, L.248, P.250 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:Q.183 Water bridges: B:K.185, B:K.185 EDO.10: 6 residues within 4Å: Chain B: K.57, R.60, R.135, F.157, D.168, F.170 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:K.57, B:R.60, B:R.60, B:R.135, B:D.168

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Poullennec, K.G. et al., Discovery of UCB9386: A Potent, Selective, and Brain-Penetrant Nuak1 Inhibitor Suitable for In Vivo Pharmacological Studies. J.Med.Chem. (2024)

Release Date

2024-10-23

Peptides

MAP/microtubule affinity-regulating kinase 3: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

MAP/microtubule affinity-regulating kinase 3

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