SMTL ID : 8uol.1

Crystal structure of human NUAK1-MARK3 (6 mutations) kinase domain chimera bound with small molecule inhibitor #31

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-dimer

Ligands

2 x X4H: Narazaciclib(Non-covalent)

X4H.1: 15 residues within 4Å: Chain A: L.20, V.28, A.41, K.43, M.90, E.91, Y.92, A.93, G.96, E.97, D.100, E.140, L.143, D.154, V.163 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:L.20, A:A.41, A:Y.92, A:L.143, A:L.143, A:V.163 Hydrogen bonds: A:K.43, A:A.93, A:A.93 Water bridges: A:D.154, A:D.154, A:D.154 Salt bridges: A:E.97, A:D.100 X4H.5: 15 residues within 4Å: Chain B: L.20, V.28, A.41, K.43, I.74, M.90, E.91, Y.92, A.93, G.96, D.100, E.140, L.143, D.154, V.163 11 PLIP interactions: 11 interactions with chain B Hydrophobic interactions: B:V.28, B:Y.92, B:L.143, B:V.163 Hydrogen bonds: B:K.43, B:A.93, B:A.93 Water bridges: B:D.154, B:D.154, B:D.154 Salt bridges: B:D.100

6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 7 residues within 4Å: Chain A: V.98, Y.99, L.102, A.139, L.142, Y.176, T.203 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.203 Water bridges: A:Y.99, A:Y.176, A:Y.176 EDO.3: 3 residues within 4Å: Chain A: R.32, I.34, G.37 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.32, A:R.32, A:I.34 EDO.4: 2 residues within 4Å: Chain A: E.305, K.311 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.305, A:K.311 EDO.6: 7 residues within 4Å: Chain B: V.98, Y.99, L.102, A.139, L.142, Y.176, T.203 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:T.203 Water bridges: B:Y.99, B:Y.176, B:Y.176 EDO.7: 3 residues within 4Å: Chain B: I.34, T.36, G.37 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:I.34 Water bridges: B:R.15 EDO.8: 2 residues within 4Å: Chain B: E.305, K.311 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:E.305, B:K.311

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Poullennec, K.G. et al., Discovery of UCB9386: A Potent, Selective, and Brain-Penetrant Nuak1 Inhibitor Suitable for In Vivo Pharmacological Studies. J.Med.Chem. (2024)

Release Date

2024-10-23

Peptides

MAP/microtubule affinity-regulating kinase 3: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

MAP/microtubule affinity-regulating kinase 3

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