SMTL ID : 8upa.1 (1 other biounit)

Structure of gp130 in complex with a de novo designed IL-6 mimetic

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.30 Å

Oligo State

hetero-1-1-mer

Ligands

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose

NAG.1: 2 residues within 4Å: Chain B: H.106, N.107 No protein-ligand interaction detected (PLIP) NAG.2: 3 residues within 4Å: Chain B: N.37, E.81, N.82 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.37

1 x PO4: PHOSPHATE ION

PO4.3: 4 residues within 4Å: Chain B: E.115, L.116, S.117, A.203 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:S.117, B:S.117

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Huang, B. et al., De novo design of miniprotein antagonists of cytokine storm inducers. Nat Commun (2024)

Release Date

2024-08-28

Peptides

De novo designed IL-6 mimetic: A
Interleukin-6 receptor subunit beta: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

De novo designed IL-6 mimetic

Interleukin-6 receptor subunit beta

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