SMTL ID : 8uqb.1

Crystal structure of RNF168 (RING)-UbcH5c fused to H2A-H2B via a 20-residue linker (crystallization condition 1)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.48 Å

Oligo State

monomer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.33, H.35, C.53, C.56 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.33, A:H.35, A:C.53, A:C.56 ZN.2: 4 residues within 4Å: Chain A: C.18, C.21, C.38, C.41 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.18, A:C.21, A:C.38, A:C.41

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 3 residues within 4Å: Chain A: R.59, S.61, S.62 Ligand excluded by PLIP CL.4: 3 residues within 4Å: Chain A: K.168, A.170, S.185 Ligand excluded by PLIP CL.5: 6 residues within 4Å: Chain A: T.327, S.328, G.394, A.395, G.396, A.397 Ligand excluded by PLIP CL.6: 2 residues within 4Å: Chain A: R.309, L.338 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hu, Q. et al., Mechanisms of RNF168 nucleosome recognition and ubiquitylation. Mol.Cell (2024)

Release Date

2024-01-17

Peptides

E3 ubiquitin-protein ligase RNF168,Ubiquitin-conjugating enzyme E2 D3,Histone H2B type 2-E,Histone H2A type 1-B/E: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

E3 ubiquitin-protein ligase RNF168,Ubiquitin-conjugating enzyme E2 D3,Histone H2B type 2-E,Histone H2A type 1-B/E

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