SMTL ID : 8uqv.1

Trehalose Synthase (TreS) of Mycobacterium tuberculosis in complex with 6-TreAz compound

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

homo-tetramer

Ligands

4 x GLC: alpha-D-glucopyranose(Non-covalent)

GLC.1: 10 residues within 4Å: Chain A: D.87, Y.90, V.127, H.130, F.191, A.227, A.228, D.339, R.418 Ligands: XVC.2 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:H.130, A:R.418, A:R.418 GLC.4: 10 residues within 4Å: Chain B: D.87, Y.90, F.169, F.191, F.192, Q.195, E.269, H.338, R.418 Ligands: XVC.5 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:D.87, B:E.269, B:H.338, B:H.338 GLC.7: 10 residues within 4Å: Chain C: D.87, Y.90, F.169, F.191, A.227, A.228, E.269, H.338, R.418 Ligands: XVC.8 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:D.87, C:Y.90, C:E.269 GLC.10: 11 residues within 4Å: Chain D: D.87, Y.90, H.130, F.169, F.191, R.225, E.269, H.338, D.339, R.418 Ligands: XVC.11 6 PLIP interactions: 6 interactions with chain D Hydrogen bonds: D:Y.90, D:Y.90, D:H.130, D:R.225, D:R.418, D:R.418

4 x XVC: 6-azido-6-deoxy-alpha-D-glucopyranose(Covalent)(Non-covalent)

XVC.2: 9 residues within 4Å: Chain A: F.191, A.228, E.269, N.271, D.339, E.340, T.342, V.368 Ligands: GLC.1 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:A.228, A:E.269, A:N.271 XVC.5: 9 residues within 4Å: Chain B: F.169, F.191, A.228, Y.231, E.269, N.271, L.343, M.345 Ligands: GLC.4 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:Y.231, B:E.269, B:E.269 XVC.8: 10 residues within 4Å: Chain C: I.168, F.191, Y.231, E.269, N.271, F.297, L.343, M.345, V.368 Ligands: GLC.7 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:N.271 XVC.11: 9 residues within 4Å: Chain D: I.168, F.191, A.228, Y.231, E.269, N.271, F.297, D.339 Ligands: GLC.10 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:A.228, D:N.271

4 x CA: CALCIUM ION(Non-covalent)

CA.3: 5 residues within 4Å: Chain A: W.188, D.197, Y.231, L.232, E.234 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.197, A:D.197, A:Y.231, A:L.232 CA.6: 5 residues within 4Å: Chain B: N.129, D.197, L.198, Y.231, E.234 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:E.234 CA.9: 4 residues within 4Å: Chain C: N.129, D.197, Y.231, E.234 2 PLIP interactions: 2 interactions with chain C Metal complexes: C:Y.231, C:E.234 CA.12: 6 residues within 4Å: Chain D: N.129, D.197, L.198, Y.231, L.232, E.234 3 PLIP interactions: 3 interactions with chain D Metal complexes: D:L.232, D:E.234, D:E.234

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kalera, K. et al., Targeting Mycobacterium tuberculosis Persistence through Inhibition of the Trehalose Catalytic Shift. Acs Infect Dis. (2024)

Release Date

2024-03-27

Peptides

Trehalose synthase/amylase TreS: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Trehalose synthase/amylase TreS