SMTL ID : 8uso.1

Full-length human CaMKII delta holoenzyme

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-12-mer

Ligands

12 x MLI: MALONATE ION(Non-functional Binders)

MLI.1: 9 residues within 4Å: Chain A: I.333, Y.341, E.353, H.367, R.405, R.425, F.439, R.441, T.446 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:I.333, A:Y.341 Hydrogen bonds: A:Y.341, A:Y.341, A:R.405, A:T.446 Salt bridges: A:H.367, A:R.425, A:R.441, A:R.441 MLI.2: 9 residues within 4Å: Chain B: I.333, Y.341, E.353, H.367, R.405, R.425, F.439, R.441, T.446 10 PLIP interactions: 10 interactions with chain B Hydrophobic interactions: B:Y.341 Hydrogen bonds: B:Y.341, B:Y.341, B:E.353, B:R.405, B:T.446 Salt bridges: B:H.367, B:R.425, B:R.441, B:R.441 MLI.3: 10 residues within 4Å: Chain C: I.333, Y.341, E.353, H.367, Y.370, R.405, R.425, F.439, R.441, T.446 9 PLIP interactions: 9 interactions with chain C Hydrophobic interactions: C:Y.341 Hydrogen bonds: C:Y.341, C:Y.341, C:R.405, C:T.446 Salt bridges: C:H.367, C:R.425, C:R.441, C:R.441 MLI.4: 9 residues within 4Å: Chain D: I.333, Y.341, E.353, H.367, R.405, R.425, F.439, R.441, T.446 10 PLIP interactions: 10 interactions with chain D Hydrophobic interactions: D:I.333, D:Y.341 Hydrogen bonds: D:Y.341, D:Y.341, D:R.405, D:T.446 Salt bridges: D:H.367, D:R.425, D:R.441, D:R.441 MLI.5: 9 residues within 4Å: Chain E: I.333, Y.341, E.353, H.367, R.405, R.425, F.439, R.441, T.446 10 PLIP interactions: 10 interactions with chain E Hydrophobic interactions: E:Y.341 Hydrogen bonds: E:Y.341, E:Y.341, E:E.353, E:R.405, E:T.446 Salt bridges: E:H.367, E:R.425, E:R.441, E:R.441 MLI.6: 10 residues within 4Å: Chain F: I.333, Y.341, E.353, H.367, Y.370, R.405, R.425, F.439, R.441, T.446 9 PLIP interactions: 9 interactions with chain F Hydrophobic interactions: F:Y.341 Hydrogen bonds: F:Y.341, F:Y.341, F:R.405, F:T.446 Salt bridges: F:H.367, F:R.425, F:R.441, F:R.441 MLI.7: 9 residues within 4Å: Chain G: I.333, Y.341, E.353, H.367, R.405, R.425, F.439, R.441, T.446 10 PLIP interactions: 10 interactions with chain G Hydrophobic interactions: G:I.333, G:Y.341 Hydrogen bonds: G:Y.341, G:Y.341, G:R.405, G:T.446 Salt bridges: G:H.367, G:R.425, G:R.441, G:R.441 MLI.8: 9 residues within 4Å: Chain H: I.333, Y.341, E.353, H.367, R.405, R.425, F.439, R.441, T.446 10 PLIP interactions: 10 interactions with chain H Hydrophobic interactions: H:Y.341 Hydrogen bonds: H:Y.341, H:Y.341, H:E.353, H:R.405, H:T.446 Salt bridges: H:H.367, H:R.425, H:R.441, H:R.441 MLI.9: 10 residues within 4Å: Chain I: I.333, Y.341, E.353, H.367, Y.370, R.405, R.425, F.439, R.441, T.446 9 PLIP interactions: 9 interactions with chain I Hydrophobic interactions: I:Y.341 Hydrogen bonds: I:Y.341, I:Y.341, I:R.405, I:T.446 Salt bridges: I:H.367, I:R.425, I:R.441, I:R.441 MLI.10: 9 residues within 4Å: Chain J: I.333, Y.341, E.353, H.367, R.405, R.425, F.439, R.441, T.446 10 PLIP interactions: 10 interactions with chain J Hydrophobic interactions: J:I.333, J:Y.341 Hydrogen bonds: J:Y.341, J:Y.341, J:R.405, J:T.446 Salt bridges: J:H.367, J:R.425, J:R.441, J:R.441 MLI.11: 9 residues within 4Å: Chain K: I.333, Y.341, E.353, H.367, R.405, R.425, F.439, R.441, T.446 10 PLIP interactions: 10 interactions with chain K Hydrophobic interactions: K:Y.341 Hydrogen bonds: K:Y.341, K:Y.341, K:E.353, K:R.405, K:T.446 Salt bridges: K:H.367, K:R.425, K:R.441, K:R.441 MLI.12: 10 residues within 4Å: Chain L: I.333, Y.341, E.353, H.367, Y.370, R.405, R.425, F.439, R.441, T.446 9 PLIP interactions: 9 interactions with chain L Hydrophobic interactions: L:Y.341 Hydrogen bonds: L:Y.341, L:Y.341, L:R.405, L:T.446 Salt bridges: L:H.367, L:R.425, L:R.441, L:R.441

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ozden, C. et al., Full-length human CaMKII delta holoenzyme. To be published

Release Date

2024-03-27

Peptides

calcium/calmodulin-dependent protein kinase: ABCDEFGHIJKL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
A

E
B

F
C

G
A

H
B

I
C

J
A

K
B

L
C

calcium/calmodulin-dependent protein kinase