SMTL ID : 8ut5.1

CryoEM structure of A/Michigan/45/2015 H1 in complex with flu HA central stem VH1-18 antibody UCA6_N55T

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-3-3-1-1-mer

Ligands

17 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 2 residues within 4Å: Chain A: G.47, N.277 Ligand excluded by PLIP NAG.2: 1 residues within 4Å: Chain A: N.288 Ligand excluded by PLIP NAG.3: 1 residues within 4Å: Chain A: N.24 Ligand excluded by PLIP NAG.4: 1 residues within 4Å: Chain A: N.12 Ligand excluded by PLIP NAG.5: 5 residues within 4Å: Chain A: E.67, D.87, N.88, C.91, P.138 Ligand excluded by PLIP NAG.6: 3 residues within 4Å: Chain C: R.46, G.47, N.277 Ligand excluded by PLIP NAG.7: 5 residues within 4Å: Chain C: N.39, C.276, N.277, T.278, N.288 Ligand excluded by PLIP NAG.8: 2 residues within 4Å: Chain C: K.23, N.24 Ligand excluded by PLIP NAG.9: 1 residues within 4Å: Chain C: N.12 Ligand excluded by PLIP NAG.10: 5 residues within 4Å: Chain C: E.67, D.87, N.88, C.137, R.222 Ligand excluded by PLIP NAG.11: 1 residues within 4Å: Chain D: N.158 Ligand excluded by PLIP NAG.12: 2 residues within 4Å: Chain E: G.47, N.277 Ligand excluded by PLIP NAG.13: 3 residues within 4Å: Chain E: N.39, C.276, N.288 Ligand excluded by PLIP NAG.14: 1 residues within 4Å: Chain E: N.24 Ligand excluded by PLIP NAG.15: 1 residues within 4Å: Chain E: N.12 Ligand excluded by PLIP NAG.16: 7 residues within 4Å: Chain E: N.65, E.67, D.87, N.88, C.137, P.138, R.222 Ligand excluded by PLIP NAG.17: 3 residues within 4Å: Chain F: E.154, N.158, T.160 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ray, R. et al., Eliciting a single amino acid change by vaccination generates antibody protection against group 1 and group 2 influenza A viruses. Immunity (2024)

Release Date

2024-05-08

Peptides

Hemagglutinin HA1 chain: ACE
Hemagglutinin HA2 chain: BDF
UCA6_N55T HC Fv: G
UCA6_N55T LC Fv: H

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

E
E

B
B

D
D

F
F

G
G

H
H

Hemagglutinin HA1 chain

Hemagglutinin HA2 chain

UCA6_N55T HC Fv

UCA6_N55T LC Fv

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