SMTL ID : 8uta.1 (1 other biounit)

yjdF riboswitch from R. gauvreauii in complex with proflavine bound to Fab BL3-6 S97N

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.05 Å

Oligo State

hetero-1-1-mer

Ligands

3 x MG: MAGNESIUM ION(Non-functional Binders)

MG.1: 3 residues within 4Å: Chain A: C.59, A.94, U.96 No protein-ligand interaction detected (PLIP) MG.2: 2 residues within 4Å: Chain A: G.57, U.58 No protein-ligand interaction detected (PLIP) MG.3: 2 residues within 4Å: Chain A: G.49, G.50 No protein-ligand interaction detected (PLIP)

1 x PRL: PROFLAVIN(Non-functional Binders)

PRL.4: 5 residues within 4Å: Chain A: A.14, U.51, U.55, A.56, U.96 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Krochmal, D. et al., Structural basis for promiscuity in ligand recognition by yjdF riboswitch. Cell Discov (2024)

Release Date

2024-04-10

Peptides

Fab BL3-6 S97N heavy chain: B
Fab BL3-6 S97N light chain: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

B
H

C
L

Fab BL3-6 S97N heavy chain

Fab BL3-6 S97N light chain

Related Entries With Identical Sequence