SMTL ID : 8uua.1

Cryo-EM structure of the Listeria innocua 50S ribosomal subunit in complex with HflXr (structure III)

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-mer

Ligands

1 x GCP: PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER(Non-covalent)

GCP.1: 23 residues within 4Å: Chain A: T.202, N.203, A.204, G.205, K.206, S.207, T.208, E.227, K.228, D.229, L.231, F.232, A.233, T.234, V.256, G.257, N.320, K.321, D.323, L.324, S.341, A.342, R.343 24 PLIP interactions: 24 interactions with chain A Hydrogen bonds: A:N.203, A:A.204, A:G.205, A:K.206, A:K.206, A:S.207, A:S.207, A:S.207, A:T.208, A:K.228, A:A.233, A:T.234, A:T.234, A:T.234, A:N.320, A:K.321, A:K.321, A:S.341, A:A.342, A:R.343, A:R.343 Salt bridges: A:D.323 pi-Cation interactions: A:K.321, A:R.343

200 x MG: MAGNESIUM ION(Non-functional Binders)(Non-covalent)

MG.2: 2 residues within 4Å: Chain B: G.7, U.8 No protein-ligand interaction detected (PLIP) MG.3: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.4: 3 residues within 4Å: Chain B: G.17, C.18 Ligands: MG.8 No protein-ligand interaction detected (PLIP) MG.5: 5 residues within 4Å: Chain B: G.17, C.18, U.566, G.567, C.568 No protein-ligand interaction detected (PLIP) MG.6: 1 residues within 4Å: Chain B: U.570 No protein-ligand interaction detected (PLIP) MG.7: 3 residues within 4Å: Chain B: G.17, C.18, G.598 No protein-ligand interaction detected (PLIP) MG.8: 3 residues within 4Å: Chain B: C.18, G.19 Ligands: MG.4 No protein-ligand interaction detected (PLIP) MG.9: 2 residues within 4Å: Chain B: G.19, C.20 No protein-ligand interaction detected (PLIP) MG.10: 3 residues within 4Å: Chain B: G.19, C.20 Chain P: K.22 No protein-ligand interaction detected (PLIP) MG.11: 3 residues within 4Å: Chain B: U.25, G.26, A.558 No protein-ligand interaction detected (PLIP) MG.12: 3 residues within 4Å: Chain B: G.24, U.25, A.559 No protein-ligand interaction detected (PLIP) MG.13: 3 residues within 4Å: Chain B: U.25, G.26, G.27 No protein-ligand interaction detected (PLIP) MG.14: 2 residues within 4Å: Chain B: G.27, G.1304 No protein-ligand interaction detected (PLIP) MG.15: 5 residues within 4Å: Chain B: A.550, U.556, G.557, U.1279, G.1280 No protein-ligand interaction detected (PLIP) MG.16: 4 residues within 4Å: Chain B: A.550, C.555, U.556, G.1281 No protein-ligand interaction detected (PLIP) MG.17: 2 residues within 4Å: Chain B: G.1280, G.1281 No protein-ligand interaction detected (PLIP) MG.18: 5 residues within 4Å: Chain B: C.37, U.497 Chain F: K.50, V.51, K.52 No protein-ligand interaction detected (PLIP) MG.19: 2 residues within 4Å: Chain B: C.39, U.40 No protein-ligand interaction detected (PLIP) MG.20: 2 residues within 4Å: Chain B: C.46, G.217 No protein-ligand interaction detected (PLIP) MG.21: 2 residues within 4Å: Chain B: U.63, A.64 No protein-ligand interaction detected (PLIP) MG.22: 4 residues within 4Å: Chain B: A.71, U.72, U.111, U.112 No protein-ligand interaction detected (PLIP) MG.23: 4 residues within 4Å: Chain B: G.70, A.71, U.112, U.113 No protein-ligand interaction detected (PLIP) MG.24: 5 residues within 4Å: Chain B: G.116, A.117, A.118, U.119, G.123 No protein-ligand interaction detected (PLIP) MG.25: 2 residues within 4Å: Chain B: A.1393, C.1395 No protein-ligand interaction detected (PLIP) MG.26: 2 residues within 4Å: Chain B: C.127, C.128 No protein-ligand interaction detected (PLIP) MG.27: 3 residues within 4Å: Chain B: C.129, C.1647, C.1648 No protein-ligand interaction detected (PLIP) MG.28: 4 residues within 4Å: Chain B: U.136, U.137, G.143, G.144 No protein-ligand interaction detected (PLIP) MG.29: 3 residues within 4Å: Chain B: G.158, U.159, G.169 No protein-ligand interaction detected (PLIP) MG.30: 3 residues within 4Å: Chain B: U.163, A.164, C.165 No protein-ligand interaction detected (PLIP) MG.31: 3 residues within 4Å: Chain B: G.350, G.351, A.352 No protein-ligand interaction detected (PLIP) MG.32: 2 residues within 4Å: Chain B: G.366, A.367 No protein-ligand interaction detected (PLIP) MG.33: 1 residues within 4Å: Chain B: G.369 No protein-ligand interaction detected (PLIP) MG.34: 3 residues within 4Å: Chain B: G.343, C.377, C.378 No protein-ligand interaction detected (PLIP) MG.35: 2 residues within 4Å: Chain B: A.417, U.449 No protein-ligand interaction detected (PLIP) MG.36: 3 residues within 4Å: Chain B: G.422, A.437, U.438 No protein-ligand interaction detected (PLIP) MG.37: 5 residues within 4Å: Chain B: A.437, U.438, A.455, G.456, C.459 No protein-ligand interaction detected (PLIP) MG.38: 3 residues within 4Å: Chain B: G.445, A.2123 Chain V: A.51 No protein-ligand interaction detected (PLIP) MG.39: 3 residues within 4Å: Chain B: A.264, A.476, U.477 No protein-ligand interaction detected (PLIP) MG.40: 3 residues within 4Å: Chain B: G.488, C.490 Chain F: T.48 No protein-ligand interaction detected (PLIP) MG.41: 4 residues within 4Å: Chain B: G.226, G.454, C.465, C.466 No protein-ligand interaction detected (PLIP) MG.42: 1 residues within 4Å: Chain B: A.228 No protein-ligand interaction detected (PLIP) MG.43: 2 residues within 4Å: Chain B: G.242, A.258 No protein-ligand interaction detected (PLIP) MG.44: 1 residues within 4Å: Chain B: A.224 No protein-ligand interaction detected (PLIP) MG.45: 2 residues within 4Å: Chain B: C.271, G.296 No protein-ligand interaction detected (PLIP) MG.46: 1 residues within 4Å: Chain B: A.304 No protein-ligand interaction detected (PLIP) MG.47: 2 residues within 4Å: Chain B: G.345, G.346 No protein-ligand interaction detected (PLIP) MG.48: 3 residues within 4Å: Chain B: A.192, A.193, A.206 No protein-ligand interaction detected (PLIP) MG.49: 1 residues within 4Å: Chain B: C.203 No protein-ligand interaction detected (PLIP) MG.50: 2 residues within 4Å: Chain B: A.206 Ligands: MG.51 No protein-ligand interaction detected (PLIP) MG.51: 4 residues within 4Å: Chain B: U.204, A.205, G.207 Ligands: MG.50 No protein-ligand interaction detected (PLIP) MG.52: 3 residues within 4Å: Chain B: A.475, A.476, U.477 No protein-ligand interaction detected (PLIP) MG.53: 1 residues within 4Å: Chain B: G.220 No protein-ligand interaction detected (PLIP) MG.54: 2 residues within 4Å: Chain B: G.222, U.473 No protein-ligand interaction detected (PLIP) MG.55: 2 residues within 4Å: Chain B: A.223, A.235 No protein-ligand interaction detected (PLIP) MG.56: 4 residues within 4Å: Chain B: G.498, A.516, A.517 Chain F: R.79 No protein-ligand interaction detected (PLIP) MG.57: 3 residues within 4Å: Chain B: U.521, G.522 Ligands: MG.58 No protein-ligand interaction detected (PLIP) MG.58: 4 residues within 4Å: Chain B: G.522, A.523, A.524 Ligands: MG.57 No protein-ligand interaction detected (PLIP) MG.59: 3 residues within 4Å: Chain B: G.534, G.535, A.536 No protein-ligand interaction detected (PLIP) MG.60: 1 residues within 4Å: Chain B: G.538 No protein-ligand interaction detected (PLIP) MG.61: 2 residues within 4Å: Chain B: C.572, U.2812 No protein-ligand interaction detected (PLIP) MG.62: 1 residues within 4Å: Chain B: G.2071 No protein-ligand interaction detected (PLIP) MG.63: 5 residues within 4Å: Chain B: G.584, C.585, G.596, U.597, G.598 No protein-ligand interaction detected (PLIP) MG.64: 4 residues within 4Å: Chain B: C.607, C.608 Chain Q: P.78, K.79 No protein-ligand interaction detected (PLIP) MG.65: 2 residues within 4Å: Chain B: U.612, A.991 No protein-ligand interaction detected (PLIP) MG.66: 6 residues within 4Å: Chain B: U.611, G.613, U.614, G.1018, A.1019 Chain Q: K.80 No protein-ligand interaction detected (PLIP) MG.67: 3 residues within 4Å: Chain B: C.623, C.624 Chain P: K.33 No protein-ligand interaction detected (PLIP) MG.68: 3 residues within 4Å: Chain B: A.629, G.630, U.1294 No protein-ligand interaction detected (PLIP) MG.69: 3 residues within 4Å: Chain B: U.631, G.1293 Chain F: G.91 No protein-ligand interaction detected (PLIP) MG.70: 5 residues within 4Å: Chain B: U.649, U.650 Chain F: P.102, K.103, K.104 No protein-ligand interaction detected (PLIP) MG.71: 3 residues within 4Å: Chain B: G.720, A.721 Chain F: R.54 No protein-ligand interaction detected (PLIP) MG.72: 4 residues within 4Å: Chain B: G.838, A.839, A.2104, C.2474 No protein-ligand interaction detected (PLIP) MG.73: 3 residues within 4Å: Chain B: C.778, G.779, G.806 No protein-ligand interaction detected (PLIP) MG.74: 4 residues within 4Å: Chain B: A.780, G.805, G.806, A.807 No protein-ligand interaction detected (PLIP) MG.75: 4 residues within 4Å: Chain B: G.821, C.822, A.839, A.840 No protein-ligand interaction detected (PLIP) MG.76: 4 residues within 4Å: Chain B: G.824, A.825 Chain D: K.48, L.49 1 PLIP interactions: 1 interactions with chain D Metal complexes: D:L.49 MG.77: 5 residues within 4Å: Chain B: A.828, U.1810, U.1811, A.1820, C.1821 No protein-ligand interaction detected (PLIP) MG.78: 3 residues within 4Å: Chain B: A.829, U.1811, A.1818 No protein-ligand interaction detected (PLIP) MG.79: 2 residues within 4Å: Chain B: U.831, C.832 No protein-ligand interaction detected (PLIP) MG.80: 5 residues within 4Å: Chain B: U.510, G.511, G.730, A.834, U.836 No protein-ligand interaction detected (PLIP) MG.81: 2 residues within 4Å: Chain B: G.1048, G.1049 No protein-ligand interaction detected (PLIP) MG.82: 2 residues within 4Å: Chain B: A.1059, U.1060 No protein-ligand interaction detected (PLIP) MG.83: 2 residues within 4Å: Chain B: A.1072, C.1180 No protein-ligand interaction detected (PLIP) MG.84: 3 residues within 4Å: Chain B: A.1075, G.2518, G.2519 No protein-ligand interaction detected (PLIP) MG.85: 4 residues within 4Å: Chain B: C.1170, G.1171, A.1172 Ligands: MG.87 No protein-ligand interaction detected (PLIP) MG.86: 4 residues within 4Å: Chain B: U.1081, G.1082, C.1165, G.1166 No protein-ligand interaction detected (PLIP) MG.87: 3 residues within 4Å: Chain B: C.1169, C.1170 Ligands: MG.85 No protein-ligand interaction detected (PLIP) MG.88: 1 residues within 4Å: Chain B: C.1170 No protein-ligand interaction detected (PLIP) MG.89: 1 residues within 4Å: Chain B: A.1096 No protein-ligand interaction detected (PLIP) MG.90: 2 residues within 4Å: Chain B: G.1184, G.1185 No protein-ligand interaction detected (PLIP) MG.91: 5 residues within 4Å: Chain B: G.1070, G.1185, C.1186, A.1189, A.1190 No protein-ligand interaction detected (PLIP) MG.92: 3 residues within 4Å: Chain B: A.1202 Chain P: R.51, K.54 1 PLIP interactions: 1 interactions with chain P Metal complexes: P:R.51 MG.93: 2 residues within 4Å: Chain B: G.1206, U.1207 No protein-ligand interaction detected (PLIP) MG.94: 3 residues within 4Å: Chain B: G.709, A.1238, G.1239 No protein-ligand interaction detected (PLIP) MG.95: 2 residues within 4Å: Chain B: A.1240, G.1241 No protein-ligand interaction detected (PLIP) MG.96: 3 residues within 4Å: Chain B: G.1243, G.1273 Chain P: V.9 No protein-ligand interaction detected (PLIP) MG.97: 3 residues within 4Å: Chain B: C.1262, A.1263 Chain P: K.15 No protein-ligand interaction detected (PLIP) MG.98: 2 residues within 4Å: Chain B: U.1261, C.1262 No protein-ligand interaction detected (PLIP) MG.99: 3 residues within 4Å: Chain B: A.1263, G.1264 Chain P: K.19 No protein-ligand interaction detected (PLIP) MG.100: 3 residues within 4Å: Chain B: G.1251, G.1252, G.1285 No protein-ligand interaction detected (PLIP) MG.101: 3 residues within 4Å: Chain B: G.1290, A.1291 Chain K: R.13 No protein-ligand interaction detected (PLIP) MG.102: 3 residues within 4Å: Chain B: G.708, A.1291, A.1292 No protein-ligand interaction detected (PLIP) MG.103: 5 residues within 4Å: Chain B: A.1292, G.1293, U.1294 Chain P: P.2, V.4 No protein-ligand interaction detected (PLIP) MG.104: 4 residues within 4Å: Chain B: G.628, G.1293 Chain P: R.3, V.4 No protein-ligand interaction detected (PLIP) MG.105: 4 residues within 4Å: Chain B: U.857, C.858, A.1296, G.1297 No protein-ligand interaction detected (PLIP) MG.106: 3 residues within 4Å: Chain B: A.1299, U.1300, G.1301 No protein-ligand interaction detected (PLIP) MG.107: 2 residues within 4Å: Chain B: G.1301, C.1302 No protein-ligand interaction detected (PLIP) MG.108: 1 residues within 4Å: Chain B: G.1304 No protein-ligand interaction detected (PLIP) MG.109: 3 residues within 4Å: Chain B: U.1308, G.1309, A.2047 No protein-ligand interaction detected (PLIP) MG.110: 2 residues within 4Å: Chain B: G.2042, G.2043 No protein-ligand interaction detected (PLIP) MG.111: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.112: 3 residues within 4Å: Chain B: G.1327, G.1329, U.1373 No protein-ligand interaction detected (PLIP) MG.113: 2 residues within 4Å: Chain B: A.1690, G.1691 No protein-ligand interaction detected (PLIP) MG.114: 1 residues within 4Å: Chain B: G.1655 No protein-ligand interaction detected (PLIP) MG.115: 3 residues within 4Å: Chain B: U.1357, C.1377, U.1378 No protein-ligand interaction detected (PLIP) MG.116: 5 residues within 4Å: Chain B: G.1314, C.1315, C.1369, U.1370, U.2044 No protein-ligand interaction detected (PLIP) MG.117: 3 residues within 4Å: Chain B: G.1376, C.1377, U.1378 No protein-ligand interaction detected (PLIP) MG.118: 1 residues within 4Å: Chain B: C.1389 No protein-ligand interaction detected (PLIP) MG.119: 4 residues within 4Å: Chain B: U.1388, C.1389, G.1390, G.1391 No protein-ligand interaction detected (PLIP) MG.120: 4 residues within 4Å: Chain B: C.738, A.1398 Chain D: K.38, K.39 1 PLIP interactions: 1 interactions with chain D Metal complexes: D:K.39 MG.121: 4 residues within 4Å: Chain B: U.1452, G.1453, G.1641, U.1642 No protein-ligand interaction detected (PLIP) MG.122: 6 residues within 4Å: Chain B: G.1474, U.1475, G.1476, A.1624, G.1625, C.1626 No protein-ligand interaction detected (PLIP) MG.123: 3 residues within 4Å: Chain B: U.1495, G.1515, U.1516 No protein-ligand interaction detected (PLIP) MG.124: 3 residues within 4Å: Chain B: C.1514, G.1515, A.1579 No protein-ligand interaction detected (PLIP) MG.125: 3 residues within 4Å: Chain B: G.1537, U.1538, G.1549 No protein-ligand interaction detected (PLIP) MG.126: 5 residues within 4Å: Chain B: G.1490, G.1491, C.1602, U.1603, G.1604 No protein-ligand interaction detected (PLIP) MG.127: 3 residues within 4Å: Chain B: U.1606, U.1607, U.1608 No protein-ligand interaction detected (PLIP) MG.128: 4 residues within 4Å: Chain B: G.1646, C.1647 Chain S: K.35, T.36 No protein-ligand interaction detected (PLIP) MG.129: 3 residues within 4Å: Chain B: C.1648, C.1649 Ligands: MG.130 No protein-ligand interaction detected (PLIP) MG.130: 4 residues within 4Å: Chain B: C.1649, G.1650 Chain S: N.57 Ligands: MG.129 No protein-ligand interaction detected (PLIP) MG.131: 4 residues within 4Å: Chain B: G.1650, U.1651 Chain S: N.57, K.59 No protein-ligand interaction detected (PLIP) MG.132: 3 residues within 4Å: Chain B: G.1680, G.1682, A.1795 No protein-ligand interaction detected (PLIP) MG.133: 2 residues within 4Å: Chain B: U.1794, U.2745 No protein-ligand interaction detected (PLIP) MG.134: 1 residues within 4Å: Chain B: C.1686 No protein-ligand interaction detected (PLIP) MG.135: 2 residues within 4Å: Chain B: G.1367, G.1368 No protein-ligand interaction detected (PLIP) MG.136: 6 residues within 4Å: Chain B: A.1699, G.1700 Chain M: T.33, E.34, A.35, P.128 No protein-ligand interaction detected (PLIP) MG.137: 3 residues within 4Å: Chain B: A.1701, G.1702 Chain M: R.4 No protein-ligand interaction detected (PLIP) MG.138: 3 residues within 4Å: Chain B: G.2851, A.2852 Chain E: G.118 No protein-ligand interaction detected (PLIP) MG.139: 5 residues within 4Å: Chain B: A.1714 Chain J: M.1, K.66, S.67, N.82 No protein-ligand interaction detected (PLIP) MG.140: 2 residues within 4Å: Chain B: G.787, C.1724 No protein-ligand interaction detected (PLIP) MG.141: 4 residues within 4Å: Chain B: C.1740, U.1741, C.2009, A.2010 No protein-ligand interaction detected (PLIP) MG.142: 4 residues within 4Å: Chain B: U.1742, C.1863, G.1864, G.2008 No protein-ligand interaction detected (PLIP) MG.143: 3 residues within 4Å: Chain B: G.1786, C.1787, A.1788 No protein-ligand interaction detected (PLIP) MG.144: 2 residues within 4Å: Chain B: G.2750, G.2751 No protein-ligand interaction detected (PLIP) MG.145: 4 residues within 4Å: Chain B: G.1791, G.2727, G.2747, C.2748 No protein-ligand interaction detected (PLIP) MG.146: 2 residues within 4Å: Chain B: C.1804, G.2008 No protein-ligand interaction detected (PLIP) MG.147: 6 residues within 4Å: Chain B: G.1826, U.1827, C.1828, G.1857, G.1858, C.1859 No protein-ligand interaction detected (PLIP) MG.148: 4 residues within 4Å: Chain B: U.1829, G.1855, G.1856, G.1857 No protein-ligand interaction detected (PLIP) MG.149: 5 residues within 4Å: Chain B: U.1831, G.1832 Chain D: R.260, R.273, R.274 No protein-ligand interaction detected (PLIP) MG.150: 3 residues within 4Å: Chain B: A.1848, C.1849 Chain D: K.40 No protein-ligand interaction detected (PLIP) MG.151: 3 residues within 4Å: Chain B: G.1858, C.1859 Chain D: R.221 No protein-ligand interaction detected (PLIP) MG.152: 2 residues within 4Å: Chain B: G.1857, G.1858 No protein-ligand interaction detected (PLIP) MG.153: 4 residues within 4Å: Chain B: U.1894, G.1895, G.1912, U.1913 No protein-ligand interaction detected (PLIP) MG.154: 4 residues within 4Å: Chain B: A.1932, A.1934, C.1935, G.1936 No protein-ligand interaction detected (PLIP) MG.155: 4 residues within 4Å: Chain B: C.1859, C.1935, A.2004 Chain D: I.241 No protein-ligand interaction detected (PLIP) MG.156: 3 residues within 4Å: Chain B: G.1983, U.1984, G.1987 No protein-ligand interaction detected (PLIP) MG.157: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.158: 1 residues within 4Å: Chain B: A.1969 No protein-ligand interaction detected (PLIP) MG.159: 2 residues within 4Å: Chain B: C.2009, A.2010 No protein-ligand interaction detected (PLIP) MG.160: 2 residues within 4Å: Chain B: A.2011, C.2012 No protein-ligand interaction detected (PLIP) MG.161: 2 residues within 4Å: Chain B: G.1745, A.2011 No protein-ligand interaction detected (PLIP) MG.162: 6 residues within 4Å: Chain B: U.1312, G.1314, C.1315, G.2043, U.2044, G.2045 No protein-ligand interaction detected (PLIP) MG.163: 2 residues within 4Å: Chain B: C.2078, G.2079 No protein-ligand interaction detected (PLIP) MG.164: 4 residues within 4Å: Chain B: G.851, U.874, A.875, U.2101 No protein-ligand interaction detected (PLIP) MG.165: 3 residues within 4Å: Chain B: G.2322, G.2370, C.2418 No protein-ligand interaction detected (PLIP) MG.166: 3 residues within 4Å: Chain B: U.2464, A.2465, A.2466 No protein-ligand interaction detected (PLIP) MG.167: 4 residues within 4Å: Chain B: A.2472, C.2473, A.2633 Chain D: E.236 No protein-ligand interaction detected (PLIP) MG.168: 3 residues within 4Å: Chain B: U.619, C.2534, G.2535 No protein-ligand interaction detected (PLIP) MG.169: 2 residues within 4Å: Chain B: G.2480, A.2481 No protein-ligand interaction detected (PLIP) MG.170: 2 residues within 4Å: Chain B: C.2485, A.2486 No protein-ligand interaction detected (PLIP) MG.171: 2 residues within 4Å: Chain B: G.2487, G.2488 No protein-ligand interaction detected (PLIP) MG.172: 2 residues within 4Å: Chain B: G.2583, C.2584 No protein-ligand interaction detected (PLIP) MG.173: 3 residues within 4Å: Chain B: U.2596, A.2597, A.2598 No protein-ligand interaction detected (PLIP) MG.174: 4 residues within 4Å: Chain B: G.2603, C.2604, C.2606, G.2607 No protein-ligand interaction detected (PLIP) MG.175: 3 residues within 4Å: Chain A: S.141 Chain B: C.2634, A.2635 No protein-ligand interaction detected (PLIP) MG.176: 2 residues within 4Å: Chain B: C.2766, A.2767 No protein-ligand interaction detected (PLIP) MG.177: 3 residues within 4Å: Chain B: A.2850, G.2851 Chain E: G.116 1 PLIP interactions: 1 interactions with chain E Metal complexes: E:G.116 MG.178: 4 residues within 4Å: Chain B: G.2875, U.2876, G.2898, C.2899 No protein-ligand interaction detected (PLIP) MG.179: 2 residues within 4Å: Chain B: A.14, G.15 No protein-ligand interaction detected (PLIP) MG.180: 2 residues within 4Å: Chain B: G.2658, C.2659 No protein-ligand interaction detected (PLIP) MG.181: 4 residues within 4Å: Chain B: G.27, A.28, A.558, A.559 No protein-ligand interaction detected (PLIP) MG.182: 3 residues within 4Å: Chain B: C.18, G.598 Chain P: G.23 No protein-ligand interaction detected (PLIP) MG.183: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.184: 1 residues within 4Å: Chain B: U.119 No protein-ligand interaction detected (PLIP) MG.185: 2 residues within 4Å: Chain B: G.179, G.180 No protein-ligand interaction detected (PLIP) MG.186: 1 residues within 4Å: Chain B: C.181 No protein-ligand interaction detected (PLIP) MG.187: 3 residues within 4Å: Chain B: A.353, A.354, G.355 No protein-ligand interaction detected (PLIP) MG.188: 1 residues within 4Å: Chain B: G.234 No protein-ligand interaction detected (PLIP) MG.189: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.190: 2 residues within 4Å: Chain B: G.1023, G.1024 No protein-ligand interaction detected (PLIP) MG.191: 2 residues within 4Å: Chain B: U.1211, G.1212 No protein-ligand interaction detected (PLIP) MG.192: 1 residues within 4Å: Chain B: G.1208 No protein-ligand interaction detected (PLIP) MG.193: 2 residues within 4Å: Chain B: C.1707 Chain E: H.140 No protein-ligand interaction detected (PLIP) MG.194: 5 residues within 4Å: Chain B: G.1825, A.1862, C.1863 Chain D: H.15, N.204 No protein-ligand interaction detected (PLIP) MG.195: 2 residues within 4Å: Chain B: G.1857 Chain D: H.53 1 PLIP interactions: 1 interactions with chain D Metal complexes: D:H.53 MG.196: 6 residues within 4Å: Chain B: A.2084, G.2611 Chain E: Y.139, R.142, P.143, G.144 1 PLIP interactions: 1 interactions with chain E Metal complexes: E:Y.139 MG.197: 5 residues within 4Å: Chain B: G.1716, A.1717 Chain J: E.5, R.7, L.20 1 PLIP interactions: 1 interactions with chain J Metal complexes: J:E.5 MG.198: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.200: 3 residues within 4Å: Chain B: U.1384 Chain S: N.57, Y.58 1 PLIP interactions: 1 interactions with chain S Metal complexes: S:N.57 MG.201: 6 residues within 4Å: Chain B: U.443, C.444 Chain V: N.32, S.50, A.51, R.52 No protein-ligand interaction detected (PLIP) MG.204: 3 residues within 4Å: Chain 1: K.25, N.26 Chain B: U.212 No protein-ligand interaction detected (PLIP)

1 x K: POTASSIUM ION(Non-covalent)

K.199: 4 residues within 4Å: Chain B: G.1076 Chain L: A.122, L.125, V.127 2 PLIP interactions: 2 interactions with chain L Metal complexes: L:A.122, L:V.127

3 x ZN: ZINC ION(Non-covalent)

ZN.202: 4 residues within 4Å: Chain Z: C.30, C.33, C.43, C.46 4 PLIP interactions: 4 interactions with chain Z Metal complexes: Z:C.30, Z:C.33, Z:C.43, Z:C.46 ZN.203: 4 residues within 4Å: Chain 0: C.9, C.12, C.36, L.39 3 PLIP interactions: 3 interactions with chain 0 Metal complexes: 0:C.9, 0:C.12, 0:C.36 ZN.205: 4 residues within 4Å: Chain 3: C.11, C.14, C.27, H.32 4 PLIP interactions: 4 interactions with chain 3 Metal complexes: 3:C.11, 3:C.14, 3:C.27, 3:H.32

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Seely, S.M. et al., Mechanistic insights into the alternative ribosome recycling by HflXr. Nucleic Acids Res. (2024)

Release Date

2024-02-28

Peptides

GTPase HflX: A
Large ribosomal subunit protein uL2: D
Large ribosomal subunit protein uL3: E
Large ribosomal subunit protein uL4: F
Large ribosomal subunit protein uL5: G
Large ribosomal subunit protein uL6: H
Large ribosomal subunit protein uL13: I
Large ribosomal subunit protein uL14: J
Large ribosomal subunit protein uL15: K
Large ribosomal subunit protein uL16: L
Large ribosomal subunit protein bL17: M
Large ribosomal subunit protein uL18: N
Large ribosomal subunit protein bL19: O
Large ribosomal subunit protein bL20: P
Large ribosomal subunit protein bL21: Q
Large ribosomal subunit protein uL22: R
Large ribosomal subunit protein uL23: S
Large ribosomal subunit protein uL24: T
Large ribosomal subunit protein bL27: U
Large ribosomal subunit protein bL28: V
Large ribosomal subunit protein uL29: W
Large ribosomal subunit protein uL30: X
Large ribosomal subunit protein bL31B: Y
Large ribosomal subunit protein bL32: Z
Large ribosomal subunit protein bL33: 0
Large ribosomal subunit protein bL34: 1
Large ribosomal subunit protein bL35: 2
Large ribosomal subunit protein bL36: 3

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
v

D
C

E
D

F
E

G
F

H
G

I
L

J
M

K
N

L
O

M
P

N
Q

O
R

P
S

Q
T

R
U

S
V

T
W

U
Y

V
Z

W
1

X
2

Y
3

Z
4

0
5

1
6

2
7

3
8

GTPase HflX

Large ribosomal subunit protein uL2

Large ribosomal subunit protein uL3

Large ribosomal subunit protein uL4

Large ribosomal subunit protein uL5

Large ribosomal subunit protein uL6

Large ribosomal subunit protein uL13

Large ribosomal subunit protein uL14

Large ribosomal subunit protein uL15

Large ribosomal subunit protein uL16

Large ribosomal subunit protein bL17

Large ribosomal subunit protein uL18

Large ribosomal subunit protein bL19

Large ribosomal subunit protein bL20

Large ribosomal subunit protein bL21

Large ribosomal subunit protein uL22

Large ribosomal subunit protein uL23

Large ribosomal subunit protein uL24

Large ribosomal subunit protein bL27

Large ribosomal subunit protein bL28

Large ribosomal subunit protein uL29

Large ribosomal subunit protein uL30

Large ribosomal subunit protein bL31B

Large ribosomal subunit protein bL32

Large ribosomal subunit protein bL33

Large ribosomal subunit protein bL34

Large ribosomal subunit protein bL35

Large ribosomal subunit protein bL36

Related Entries With Identical Sequence