SMTL ID : 8uvw.1

Crystal structure of RAD51-BRCA2 Cter complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.73 Å

Oligo State

hetero-1-1-mer

Ligands

2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 13 residues within 4Å: Chain A: F.87, R.88, T.89, G.90, K.91, T.92, Q.93, R.128, R.268, I.287, N.288, A.289 Ligands: BEF.2 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:R.88, A:T.89, A:G.90, A:K.91, A:T.92, A:T.92, A:Q.93, A:Q.93, A:R.128, A:R.268, A:R.268 Salt bridges: A:K.91 pi-Cation interactions: A:R.128 ADP.5: 14 residues within 4Å: Chain A: P.279 Chain B: F.33, R.34, T.35, G.36, K.37, T.38, Q.39, R.74, R.214, I.233, N.234, A.235 Ligands: BEF.6 14 PLIP interactions: 13 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:R.34, B:R.34, B:R.34, B:T.35, B:G.36, B:K.37, B:T.38, B:T.38, B:Q.39, B:Q.39, B:R.74, B:R.214 Salt bridges: B:K.37 Water bridges: A:S.277

2 x BEF: BERYLLIUM TRIFLUORIDE ION(Non-covalent)

BEF.2: 7 residues within 4Å: Chain A: F.87, T.92, E.121, T.123, D.180, T.224 Ligands: ADP.1 No protein-ligand interaction detected (PLIP) BEF.6: 10 residues within 4Å: Chain A: A.253 Chain B: F.33, K.37, T.38, E.67, T.69, D.126, S.127, T.170 Ligands: ADP.5 No protein-ligand interaction detected (PLIP)

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 5 residues within 4Å: Chain A: Q.59, L.71, G.74, E.76, L.278 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:Q.59, A:G.74, A:E.76, A:E.76, A:S.277, A:S.277 EDO.4: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Longo, M.A. et al., Molecular Recognition of RAD51 by the BRCA2 Carboxy Terminal Domain. To Be Published

Release Date

2024-11-06

Peptides

Breast cancer type 2 susceptibility protein, DNA repair protein RAD51 homolog 1 fusion: A
DNA repair protein RAD51 homolog 1,Breast cancer type 2 susceptibility protein: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
D

Breast cancer type 2 susceptibility protein, DNA repair protein RAD51 homolog 1 fusion

DNA repair protein RAD51 homolog 1,Breast cancer type 2 susceptibility protein