SMTL ID : 8uvz.1

Bacillus subtilis DHFR bound to NADP+ and folate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 0.93 Å

Oligo State

monomer

Ligands

1 x FOL: FOLIC ACID(Non-covalent)

FOL.1: 21 residues within 4Å: Chain A: I.5, F.6, A.7, L.20, W.22, D.27, L.28, A.29, Y.30, F.31, K.32, T.46, S.49, I.50, L.54, P.55, R.57, I.95, Y.101, T.114 Ligands: NAP.2 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:K.32, A:I.50, A:I.50, A:L.54 Hydrogen bonds: A:I.5, A:F.6, A:T.114 Water bridges: A:W.22, A:A.29, A:A.29 Salt bridges: A:D.27, A:R.57 pi-Stacking: A:F.31

1 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.2: 32 residues within 4Å: Chain A: F.6, A.7, I.14, G.15, K.16, N.18, D.19, L.20, P.21, W.22, G.43, R.44, K.45, T.46, S.49, V.62, T.63, S.64, A.65, S.77, S.78, L.79, I.95, G.96, G.97, A.98, Q.99, L.100, Y.101, D.103, R.124 Ligands: FOL.1 33 PLIP interactions: 33 interactions with chain A Hydrophobic interactions: A:L.20, A:T.46, A:Y.101 Hydrogen bonds: A:A.7, A:I.14, A:K.16, A:N.18, A:N.18, A:G.43, A:G.43, A:R.44, A:R.44, A:K.45, A:T.46, A:T.63, A:S.64, A:G.97, A:A.98, A:Q.99, A:L.100 Water bridges: A:R.44, A:K.45, A:K.45, A:S.64, A:S.64, A:Q.99, A:D.103, A:D.103, A:R.124, A:R.124, A:R.124 Salt bridges: A:R.44, A:R.124

1 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)

1PE.3: 7 residues within 4Å: Chain A: N.26, A.29, Y.30, K.33, I.34, E.140, F.154 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.33

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Smith, N. et al., Bacillus subtilis DHFR bound to NADP+ and folate. To Be Published

Release Date

2023-11-15

Peptides

Dihydrofolate reductase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Dihydrofolate reductase