SMTL ID : 8uw3.1

Human LINE-1 retrotransposon ORF2 protein engaged with template RNA in elongation state

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

monomer

Ligands

1 x TTP: THYMIDINE-5'-TRIPHOSPHATE(Non-covalent)

TTP.1: 15 residues within 4Å: Chain A: K.519, R.522, R.531, D.600, A.601, E.602, K.603, A.604, F.605, Q.659, D.702, N.734 Chain B: A.61, C.62 Chain C: G.13 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:F.605, A:Q.659 Hydrogen bonds: A:A.601, A:K.603, A:A.604, A:N.734 Salt bridges: A:K.519, A:K.519, A:R.522, A:R.531, A:R.531

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Thawani, A. et al., Template and target-site recognition by human LINE-1 in retrotransposition. Nature (2024)

Release Date

2023-12-20

Peptides

LINE-1 retrotransposable element ORF2 protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

LINE-1 retrotransposable element ORF2 protein