SMTL ID : 8uw8.1

Site-one protease and SPRING

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-mer

Ligands

1 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.1: 12 residues within 4Å: Chain A: W.323, M.353, W.378, E.379, G.383, Y.384, R.386, V.513, N.515, S.550, Y.561, A.563 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:W.323

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)

NAG.2: 9 residues within 4Å: Chain A: N.728, T.729, S.730, D.771, G.772, L.773, D.809, G.811, L.815 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.728, A:S.730, A:S.730, A:S.730, A:L.773

1 x CA: CALCIUM ION(Non-covalent)

CA.3: 6 residues within 4Å: Chain A: N.630, L.631, D.651, D.655, D.697, E.699 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.697, A:E.699, H2O.1, H2O.1

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hendrix, S. et al., SPRING licenses S1P-mediated cleavage of SREBP2 by displacing an inhibitory pro-domain. Nat Commun (2024)

Release Date

2024-07-10

Peptides

Membrane-bound transcription factor site-1 protease: A
SREBP regulating gene protein: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Membrane-bound transcription factor site-1 protease

SREBP regulating gene protein