SMTL ID : 8uxs.1 (1 other biounit)

KLHDC2 ubiquitin ligase in complex with a novel small-molecule

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x XU8: {4-[(2-{[(4-tert-butylphenyl)methyl]sulfanyl}acetamido)methyl]-1H-1,2,3-triazol-1-yl}acetic acid

XU8.1: 18 residues within 4Å: Chain A: Y.29, D.39, K.126, Y.142, D.157, R.168, W.170, A.198, A.199, R.215, R.220, S.248, W.249, F.266, W.300, L.321, L.322, H.324 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:Y.29, A:L.321, A:L.322 Hydrogen bonds: A:K.126, A:W.170, A:S.248, A:S.248 Salt bridges: A:R.215, A:R.220 pi-Stacking: A:Y.142 pi-Cation interactions: A:K.126, A:R.215

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rusnac, D.V. et al., KLHDC2 ubiquitin ligase in complex with a novel small-molecule. To Be Published

Release Date

2024-07-10

Peptides

Kelch domain-containing protein 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Kelch domain-containing protein 2

Related Entries With Identical Sequence