SMTL ID : 8uy1.1

Methylenetetrahydrofolate reductase from Chaetomium thermophilum DSM 1495, Active (R) State

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.49 Å

Oligo State

homo-tetramer

Ligands

4 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 22 residues within 4Å: Chain A: T.55, W.56, H.84, T.86, L.111, L.113, R.114, G.115, D.116, Y.133, A.134, K.135, A.154, Y.156, C.160, N.163, H.172, E.175, K.176, V.185, Q.187, Y.279 21 PLIP interactions: 21 interactions with chain A Hydrophobic interactions: A:A.154, A:V.185 Hydrogen bonds: A:W.56, A:W.56, A:H.84, A:R.114, A:G.115, A:G.115, A:D.116, A:D.116, A:A.134, A:Y.156, A:Y.156, A:N.163, A:E.175 Salt bridges: A:K.176, A:K.176 pi-Stacking: A:Y.133, A:Y.133, A:H.172, A:H.172 FAD.2: 26 residues within 4Å: Chain B: T.55, W.56, H.84, T.86, L.111, A.112, L.113, R.114, G.115, D.116, Y.133, A.134, K.135, A.154, G.155, Y.156, D.162, N.163, L.169, H.172, E.175, K.176, V.185, T.186, Q.187, Y.279 23 PLIP interactions: 23 interactions with chain B Hydrophobic interactions: B:L.111, B:A.154, B:V.185 Hydrogen bonds: B:W.56, B:W.56, B:H.84, B:R.114, B:G.115, B:D.116, B:D.116, B:A.134, B:Y.156, B:Y.156, B:D.162, B:N.163, B:H.172, B:E.175 Salt bridges: B:K.176, B:K.176 pi-Stacking: B:Y.133, B:Y.133, B:H.172, B:H.172 FAD.3: 13 residues within 4Å: Chain C: T.55, W.56, H.84, T.86, Y.133, A.134, K.135, A.154, H.172, K.176, V.185, Q.187, Y.279 10 PLIP interactions: 10 interactions with chain C Hydrophobic interactions: C:V.185, C:Q.187 Hydrogen bonds: C:W.56, C:W.56, C:Y.133, C:A.134, C:K.135, C:K.135 Salt bridges: C:K.176 pi-Stacking: C:Y.133 FAD.4: 23 residues within 4Å: Chain D: T.55, W.56, H.84, T.86, L.111, L.113, R.114, G.115, D.116, Y.133, A.134, K.135, A.154, Y.156, D.162, N.163, L.168, H.172, E.175, K.176, V.185, Q.187, Y.279 23 PLIP interactions: 23 interactions with chain D Hydrophobic interactions: D:L.111, D:L.113, D:A.154, D:V.185 Hydrogen bonds: D:W.56, D:W.56, D:R.114, D:R.114, D:G.115, D:G.115, D:D.116, D:A.134, D:K.135, D:Y.156, D:Y.156, D:D.162, D:N.163, D:L.168 Salt bridges: D:H.172, D:K.176, D:K.176 pi-Cation interactions: D:H.172, D:H.172

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yamada, K. et al., Structural basis of S-adenosylmethionine-dependent allosteric transition from active to inactive states in methylenetetrahydrofolate reductase. Nat Commun (2024)

Release Date

2024-06-19

Peptides

Methylenetetrahydrofolate reductase-like protein: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

B
A

C
B

D
C

Methylenetetrahydrofolate reductase-like protein