SMTL ID : 8uyh.1

Structure of AMP-PNP-bound Pediculus humanus (Ph) PINK1 dimer

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-dimer

Ligands

2 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER(Non-covalent)

ANP.1: 10 residues within 4Å: Chain A: A.79, K.81, M.178, K.179, R.180, Y.181, T.184, L.229, D.245 Ligands: MG.2 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:K.81, A:K.179, A:Y.181, A:D.245, A:D.245 Salt bridges: A:K.81 ANP.3: 13 residues within 4Å: Chain B: A.54, V.61, A.79, K.81, M.178, K.179, R.180, Y.181, T.184, L.229, D.245 Ligands: MG.4, MG.5 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:K.81, B:K.179, B:Y.181 Salt bridges: B:K.81

3 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 2 residues within 4Å: Chain A: D.245 Ligands: ANP.1 No protein-ligand interaction detected (PLIP) MG.4: 2 residues within 4Å: Chain B: D.245 Ligands: ANP.3 No protein-ligand interaction detected (PLIP) MG.5: 4 residues within 4Å: Chain B: D.226, N.227, D.245 Ligands: ANP.3 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:D.245

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gan, Z.Y. et al., Interaction of PINK1 with nucleotides and kinetin. Sci Adv (2024)

Release Date

2024-01-31

Peptides

Serine/threonine-protein kinase Pink1, mitochondrial: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Serine/threonine-protein kinase Pink1, mitochondrial

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