SMTL ID : 8uz2.1

E. coli acetyl-CoA carboxylase, narrow helical local reconstruction, 3.18 Angstrom

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-2-2-3-mer

Ligands

2 x BTN: BIOTIN(Covalent)

BTN.1: 4 residues within 4Å: Chain B: Y.13, P.18, K.43, M.45 No protein-ligand interaction detected (PLIP) BTN.6: 3 residues within 4Å: Chain F: Y.13, P.18, K.43 No protein-ligand interaction detected (PLIP)

2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.2: 18 residues within 4Å: Chain C: K.116, K.159, G.163, G.164, G.165, G.166, M.169, E.201, K.202, L.204, H.209, Q.233, H.236, E.276, L.278, E.288, I.437 Ligands: MG.3 9 PLIP interactions: 9 interactions with chain C Hydrogen bonds: C:G.166, C:K.202, C:L.204, C:H.209, C:Q.233, C:H.236 Salt bridges: C:K.116, C:K.116, C:K.159 ADP.7: 18 residues within 4Å: Chain G: K.116, K.159, G.163, G.164, G.165, G.166, M.169, E.201, K.202, L.204, H.209, Q.233, H.236, E.276, L.278, E.288, I.437 Ligands: MG.8 11 PLIP interactions: 11 interactions with chain G Hydrogen bonds: G:G.165, G:G.166, G:E.201, G:K.202, G:L.204, G:H.209, G:Q.233, G:H.236 Salt bridges: G:K.116, G:K.116, G:K.159

2 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 3 residues within 4Å: Chain C: E.276, E.288 Ligands: ADP.2 2 PLIP interactions: 2 interactions with chain C Metal complexes: C:E.276, C:E.288 MG.8: 3 residues within 4Å: Chain G: E.276, E.288 Ligands: ADP.7 2 PLIP interactions: 2 interactions with chain G Metal complexes: G:E.276, G:E.288

2 x ZN: ZINC ION(Non-covalent)

ZN.4: 4 residues within 4Å: Chain D: C.26, C.29, C.45, C.48 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:C.26, D:C.29, D:C.45, D:C.48 ZN.9: 4 residues within 4Å: Chain H: C.26, C.29, C.45, C.48 4 PLIP interactions: 4 interactions with chain H Metal complexes: H:C.26, H:C.29, H:C.45, H:C.48

2 x ACO: ACETYL COENZYME *A(Non-covalent)

ACO.5: 17 residues within 4Å: Chain D: M.129, G.130, S.132, G.162, G.163, A.164, M.166, Q.167, P.200, M.202, G.203, G.204, L.223, G.228, P.229 Chain E: V.224, I.225 11 PLIP interactions: 10 interactions with chain D, 1 interactions with chain E Hydrophobic interactions: D:P.200, D:M.202, D:L.223, E:I.225 Hydrogen bonds: D:S.132, D:G.162, D:A.164, D:A.164, D:M.166, D:G.204, D:G.228 ACO.10: 17 residues within 4Å: Chain A: V.224, I.225 Chain H: M.129, G.130, S.132, G.162, G.163, A.164, M.166, Q.167, P.200, M.202, G.203, G.204, L.223, G.228, P.229 11 PLIP interactions: 10 interactions with chain H, 1 interactions with chain A Hydrophobic interactions: H:P.200, H:M.202, H:L.223, A:I.225 Hydrogen bonds: H:S.132, H:G.162, H:A.164, H:A.164, H:M.166, H:G.204, H:G.228

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xu, X. et al., E. coli acetyl-CoA carboxylase, narrow helical local reconstruction, 3.18 Angstrom. To Be Published

Release Date

2024-11-20

Peptides

Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha: AE
Biotin carboxyl carrier protein of acetyl-CoA carboxylase: BF
Biotin carboxylase: CG
Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta: DHI

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

E
E

B
B

F
F

C
C

G
G

D
D

H
H

I
I

Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha

Biotin carboxyl carrier protein of acetyl-CoA carboxylase

Biotin carboxylase

Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta