SMTL ID : 8v08.1

Crystal structure of human PLD4 co-crystallized with 5'Pi-ssDNA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

homo-dimer

Ligands

2 x DT- DT- DT: ssDNA(Non-covalent)

DT-DT-DT.1: 11 residues within 4Å: Chain A: Y.121, L.165, R.192, H.196, R.217, F.330, N.364, F.405, H.410, Y.431, T.435 Protein-ligand interaction information (PLIP) not available DT-DT-DT.2: 13 residues within 4Å: Chain B: Y.120, Y.121, L.165, R.192, R.217, M.322, R.329, F.330, F.405, H.410, D.430, Y.431, S.434 Protein-ligand interaction information (PLIP) not available

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yuan, M. et al., Structural and mechanistic insights into disease-associated endolysosomal exonucleases PLD3 and PLD4. Structure (2024)

Release Date

2024-03-13

Peptides

5'-3' exonuclease PLD4: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

5'-3' exonuclease PLD4