SMTL ID : 8v1g.1

plasmodium falciparum Niemann-Pick type C1-related protein bound with MMV009108

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

monomer

Ligands

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 3 residues within 4Å: Chain A: N.165, S.167, L.168 No protein-ligand interaction detected (PLIP) NAG.4: 2 residues within 4Å: Chain A: N.292, N.294 No protein-ligand interaction detected (PLIP)

1 x CLR: CHOLESTEROL(Non-covalent)

CLR.2: 7 residues within 4Å: Chain A: R.90, F.387, F.1132, A.1208, F.1213, L.1246, F.1247 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:F.387, A:F.1132, A:A.1208, A:F.1213, A:L.1246, A:F.1247, A:F.1247, A:F.1247 Hydrogen bonds: A:R.90

1 x Y6F: MMV009108(Non-covalent)

Y6F.3: 20 residues within 4Å: Chain A: I.63, L.66, Y.67, V.486, P.555, P.556, E.558, T.559, I.625, F.628, Y.1105, A.1108, F.1109, F.1305, I.1368, I.1369, K.1434, F.1436, T.1437, F.1440 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:Y.67, A:P.555, A:P.556, A:T.559, A:I.625, A:F.628, A:Y.1105, A:A.1108, A:F.1109, A:I.1368, A:I.1369, A:I.1369, A:F.1436, A:F.1436, A:F.1440, A:F.1440 Hydrogen bonds: A:T.1437

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, Z. et al., The Plasmodium falciparum NCR1 transporter is an antimalarial target that exports cholesterol from the parasite's plasma membrane. Sci Adv (2024)

Release Date

2024-11-20

Peptides

Niemann-Pick type C1-related protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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Niemann-Pick type C1-related protein

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