- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.40 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x XLR: 1,5,6-trideoxy-6,6-difluoro-1-(N-hydroxyformamido)-6-phosphono-D-ribo-hexitol(Non-covalent)
- 4 x ZN: ZINC ION(Non-covalent)
ZN.2: 8 residues within 4Å:- Chain A: H.86, E.90, F.95, H.205
- Chain B: G.79, P.194, Q.197
- Ligands: XLR.5
3 PLIP interactions:3 interactions with chain A- Metal complexes: A:H.86, A:E.90, A:H.205
ZN.6: 8 residues within 4Å:- Chain A: G.79, P.194, Q.197
- Chain B: H.86, E.90, F.95, H.205
- Ligands: XLR.1
3 PLIP interactions:3 interactions with chain B- Metal complexes: B:H.86, B:E.90, B:H.205
ZN.10: 8 residues within 4Å:- Chain C: H.86, E.90, F.95, H.205
- Chain D: G.79, P.194, Q.197
- Ligands: XLR.13
3 PLIP interactions:3 interactions with chain C- Metal complexes: C:H.86, C:E.90, C:H.205
ZN.14: 8 residues within 4Å:- Chain C: G.79, P.194, Q.197
- Chain D: H.86, E.90, F.95, H.205
- Ligands: XLR.9
3 PLIP interactions:3 interactions with chain D- Metal complexes: D:H.86, D:E.90, D:H.205
- 4 x CL: CHLORIDE ION(Non-functional Binders)
CL.3: 5 residues within 4Å:- Chain A: K.71, N.136
- Chain C: K.71, N.136
- Ligands: CL.11
Ligand excluded by PLIPCL.7: 5 residues within 4Å:- Chain B: K.71, N.136
- Chain D: K.71, N.136
- Ligands: CL.15
Ligand excluded by PLIPCL.11: 5 residues within 4Å:- Chain A: K.71, N.136
- Chain C: K.71, N.136
- Ligands: CL.3
Ligand excluded by PLIPCL.15: 5 residues within 4Å:- Chain B: K.71, N.136
- Chain D: K.71, N.136
- Ligands: CL.7
Ligand excluded by PLIP- 4 x NA: SODIUM ION(Non-functional Binders)
NA.4: 3 residues within 4Å:- Chain A: G.135, N.136, K.163
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:K.163
NA.8: 3 residues within 4Å:- Chain B: G.135, N.136, K.163
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:G.135, B:K.163
NA.12: 3 residues within 4Å:- Chain C: G.135, N.136, K.163
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:G.135, C:K.163
NA.16: 3 residues within 4Å:- Chain D: G.135, N.136, K.163
2 PLIP interactions:2 interactions with chain D- Hydrogen bonds: D:N.136, D:K.163
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Moreau, F. et al., Potentiating Activity of GmhA Inhibitors on Gram-Negative Bacteria. J.Med.Chem. (2024)
- Release Date
- 2023-12-06
- Peptides
- Phosphoheptose isomerase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.40 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x XLR: 1,5,6-trideoxy-6,6-difluoro-1-(N-hydroxyformamido)-6-phosphono-D-ribo-hexitol(Non-covalent)
- 4 x ZN: ZINC ION(Non-covalent)
- 4 x CL: CHLORIDE ION(Non-functional Binders)
- 4 x NA: SODIUM ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Moreau, F. et al., Potentiating Activity of GmhA Inhibitors on Gram-Negative Bacteria. J.Med.Chem. (2024)
- Release Date
- 2023-12-06
- Peptides
- Phosphoheptose isomerase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A