SMTL ID : 8v37.1

Crystal structure of HpsN D352A mutant from Cupriavidus pinatubonensis in complex with NAD+

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.23 Å

Oligo State

homo-dimer

Ligands

1 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.1: 17 residues within 4Å: Chain A: V.23, L.46, D.47, Y.119, P.121, Y.125, S.151, G.178, G.179, Q.181, G.203, N.204, F.206, V.207, P.226, S.227, H.252 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:D.47, A:Y.119, A:Y.119, A:S.151, A:S.151, A:G.179, A:Q.181, A:N.204, A:N.204, A:S.227 Water bridges: A:Q.181 pi-Stacking: A:F.206, A:F.206

2 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain A: H.127, Q.249, H.252 Chain B: H.412 5 PLIP interactions: 1 interactions with chain B, 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: B:H.412, A:H.127, A:H.252, H2O.3, H2O.7 ZN.3: 4 residues within 4Å: Chain A: H.412 Chain B: H.127, Q.249, H.252 5 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: B:H.127, B:H.252, A:H.412, H2O.6, H2O.6

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Burchill, L. et al., Structural and kinetic insights into the stereospecific oxidation of R -2,3-dihydroxypropanesulfonate by DHPS-3-dehydrogenase from Cupriavidus pinatubonensis. Chem Sci (2024)

Release Date

2024-09-25

Peptides

Sulfopropanediol 3-dehydrogenase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Sulfopropanediol 3-dehydrogenase