SMTL ID : 8v3o.1

CCP5 in complex with Glu-P-peptide 1 transition state analog

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

hetero-1-1-mer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.252, E.255, H.353 Chain B: X.10 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.252, A:E.255, A:E.255, A:H.353

2 x MLT: D-MALATE(Non-covalent)

MLT.2: 6 residues within 4Å: Chain A: R.271, R.276, N.387, Q.476, R.479, I.483 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:R.276, A:Q.476 Water bridges: A:R.496 Salt bridges: A:R.271, A:R.276, A:R.479, A:R.479 MLT.3: 5 residues within 4Å: Chain A: G.70, N.71, R.72, N.96 Chain B: E.12 5 PLIP interactions: 4 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:G.70 Water bridges: A:N.71, A:R.72, B:E.12 Salt bridges: A:R.72

1 x K: POTASSIUM ION(Non-covalent)

K.4: 1 residues within 4Å: Chain A: Y.404 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chen, J. et al., Tubulin code eraser CCP5 binds branch glutamates by substrate deformation. Nature (2024)

Release Date

2024-07-17

Peptides

Cytosolic carboxypeptidase-like protein 5: A
Tubulin beta-2A chain: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
I

Cytosolic carboxypeptidase-like protein 5

Tubulin beta-2A chain

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