SMTL ID : 8v3q.1

Structure of CCP5 class1

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

monomer

Ligands

1 x UNK- UNK- UNK- UNK- GLU- UNK- UNK- UNK- UNK: beta tubulin tail(Non-covalent)

UNK-UNK-UNK-UNK-GLU-UNK-UNK-UNK-UNK.1: 17 residues within 4Å: Chain A: N.96, K.97, Q.98, K.100, H.252, E.255, Y.302, R.303, H.434, G.435, H.436, A.437, S.438, K.439, Y.445 Ligands: ZN.2, GLU.3 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:N.96, A:Y.302, A:K.439 Hydrogen bonds: A:K.97, A:Q.98, A:K.100, A:K.100, A:A.437, A:S.438, A:S.438

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 5 residues within 4Å: Chain A: H.252, E.255, H.434, G.435 Ligands: UNK-UNK-UNK-UNK-GLU-UNK-UNK-UNK-UNK.1 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.252, A:E.255, A:E.255, A:H.434

1 x GLU: GLUTAMIC ACID(Non-covalent)

GLU.3: 9 residues within 4Å: Chain A: H.252, N.312, R.313, Y.445, K.495, S.498, R.500, T.514 Ligands: UNK-UNK-UNK-UNK-GLU-UNK-UNK-UNK-UNK.1 10 PLIP interactions: 10 interactions with chain A, Hydrophobic interactions: A:Y.445, A:K.495, A:T.514 Hydrogen bonds: A:N.312, A:S.498 Salt bridges: A:H.252, A:R.313, A:H.434, A:K.495, A:R.500

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chen, J. et al., Tubulin code eraser CCP5 binds branch glutamates by substrate deformation. Nature (2024)

Release Date

2024-07-17

Peptides

Cytosolic carboxypeptidase-like protein 5: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cytosolic carboxypeptidase-like protein 5

Related Entries With Identical Sequence