SMTL ID : 8v3u.1

ACAD11 D220A with 4-hydroxyvaleryl-CoA

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-tetramer

Ligands

4 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 26 residues within 4Å: Chain A: F.502, M.504, T.505, V.509, S.510, S.511, S.512, W.536, S.538, H.596, T.747, L.750, D.752, G.753, P.754, E.756, V.757 Chain B: E.666 Chain D: R.655, F.658, L.662, H.665, Q.725, V.726, G.728, G.729 20 PLIP interactions: 14 interactions with chain A, 5 interactions with chain D, 1 interactions with chain B Hydrophobic interactions: A:W.536, A:W.536 Hydrogen bonds: A:F.502, A:M.504, A:T.505, A:T.505, A:S.510, A:S.511, A:S.511, A:S.512, A:S.512, A:S.538, A:D.752, A:G.753, D:R.655, D:Q.725, D:G.729, B:E.666 Salt bridges: D:R.655 pi-Stacking: D:H.665 FAD.2: 26 residues within 4Å: Chain A: E.666 Chain B: F.502, M.504, T.505, V.509, S.510, S.511, S.512, W.536, S.538, H.596, T.747, L.750, D.752, G.753, P.754, E.756, V.757 Chain C: R.655, F.658, L.662, H.665, Q.725, V.726, G.728, G.729 20 PLIP interactions: 14 interactions with chain B, 5 interactions with chain C, 1 interactions with chain A Hydrophobic interactions: B:W.536, B:W.536 Hydrogen bonds: B:F.502, B:M.504, B:T.505, B:T.505, B:S.510, B:S.511, B:S.511, B:S.512, B:S.512, B:S.538, B:D.752, B:G.753, C:R.655, C:Q.725, C:G.729, A:E.666 Salt bridges: C:R.655 pi-Stacking: C:H.665 FAD.3: 26 residues within 4Å: Chain B: R.655, F.658, L.662, H.665, Q.725, V.726, G.728, G.729 Chain C: F.502, M.504, T.505, V.509, S.510, S.511, S.512, W.536, S.538, H.596, T.747, L.750, D.752, G.753, P.754, E.756, V.757 Chain D: E.666 20 PLIP interactions: 14 interactions with chain C, 5 interactions with chain B, 1 interactions with chain D Hydrophobic interactions: C:W.536, C:W.536 Hydrogen bonds: C:F.502, C:M.504, C:T.505, C:T.505, C:S.510, C:S.511, C:S.511, C:S.512, C:S.512, C:S.538, C:D.752, C:G.753, B:R.655, B:Q.725, B:G.729, D:E.666 Salt bridges: B:R.655 pi-Stacking: B:H.665 FAD.4: 26 residues within 4Å: Chain A: R.655, F.658, L.662, H.665, Q.725, V.726, G.728, G.729 Chain C: E.666 Chain D: F.502, M.504, T.505, V.509, S.510, S.511, S.512, W.536, S.538, H.596, T.747, L.750, D.752, G.753, P.754, E.756, V.757 20 PLIP interactions: 14 interactions with chain D, 5 interactions with chain A, 1 interactions with chain C Hydrophobic interactions: D:W.536, D:W.536 Hydrogen bonds: D:F.502, D:M.504, D:T.505, D:T.505, D:S.510, D:S.511, D:S.511, D:S.512, D:S.512, D:S.538, D:D.752, D:G.753, A:R.655, A:Q.725, A:G.729, C:E.666 Salt bridges: A:R.655 pi-Stacking: A:H.665

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, J. et al., ACAD10 and ACAD11 enable mammalian 4-hydroxy acid lipid catabolism. To Be Published

Release Date

2024-12-11

Peptides

Acyl-Coenzyme A dehydrogenase family, member 11: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Acyl-Coenzyme A dehydrogenase family, member 11